Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_O17
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    30   0.52 
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   4.9  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   4.9  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    26   8.5  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    26   8.5  

>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 13/43 (30%), Positives = 27/43 (62%)
 Frame = +3

Query: 519 QEESSTQTQEIKNTPRKAKLRQDVKVLKQKLKSREIVIVNIKS 647
           QEE   +  EI+   R+++L+++ +  K+  K  E++I N+K+
Sbjct: 361 QEEERKRQAEIEKEIRQSRLQEEERKKKKLAKYTEVIISNLKA 403


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 495  KMSFKKVKQEESSTQTQ-EIKN-TPRKAKLRQDVKVLKQKLKSREIVIVNIKSIL 653
            KMSFKK K E+ S   Q E+ N T       + +  LK +L+S    +   KS L
Sbjct: 957  KMSFKKKKNEQRSQSFQVELSNLTSEYDTTTESIATLKTELQSLNKYVDEHKSRL 1011


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +3

Query: 519 QEESSTQTQEIKNTPRKAKLRQDVKVLKQKLKS 617
           ++ +++Q  E  NTP KAK++ + KV + K KS
Sbjct: 455 KKTANSQATENNNTPSKAKVKAESKV-RSKAKS 486


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 240 FFSL*YLIPFVL*IVLNLCHILNL 311
           FFSL YL+PFV+   L++ H++ L
Sbjct: 179 FFSLHYLMPFVI-AALSVMHLIAL 201


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -3

Query: 364 SYNMKNTLQNYSFHDCFFKFSI*HRL--STIYKTNGIKYYNEKKYLTF*KYMLTLVKIY 194
           SYN  N L N+S++   F+F +  +     ++ T G K   E +Y+     M+    +Y
Sbjct: 137 SYNNTNLLYNFSYNANPFEFWVTRKSDGEVLFDTRGQKLVFEDQYIELTTNMVENYNLY 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,335
Number of Sequences: 5004
Number of extensions: 59646
Number of successful extensions: 169
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)