Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_O17
         (912 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0069 + 536787-537068,537193-537493,537528-537581,538848-53...    29   5.1  
05_04_0224 - 19198722-19198835,19198947-19199436,19200478-192006...    28   9.0  

>01_01_0069 +
           536787-537068,537193-537493,537528-537581,538848-539241,
           539345-539595,539678-539798,539893-540133,540341-540445,
           540571-540615,540738-540890,541132-541410,541705-541841,
           541975-542017,542228-542329
          Length = 835

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 145 SLKTTYIKRVHHDYTETFTIFEKKTSHKLYQXKSLKEXPSS 23
           SL    +KR+ HDY+   TI    T H  +Q +     PSS
Sbjct: 24  SLLKKDLKRMQHDYSPQGTIITTSTPHDHHQQQQSVAAPSS 64


>05_04_0224 -
           19198722-19198835,19198947-19199436,19200478-19200641,
           19202534-19202632,19204069-19204175,19204278-19204401,
           19205113-19205242,19205314-19205433,19205861-19206002,
           19207243-19207326,19207651-19207742,19207855-19207944,
           19208057-19208136,19208312-19208451,19208587-19209067
          Length = 818

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +1

Query: 337 FAMYFSYYKSHHVVFLELFLLY*IASHASMYIICLTLSERG---GSSSKYDVGI 489
           +++Y + Y+  HV+   LFL   +    +M  IC T+SE G   GSS    VGI
Sbjct: 256 YSIYAASYRVKHVMITSLFL---VLGAMTMTWICDTISESGFGHGSSLIICVGI 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,019,289
Number of Sequences: 37544
Number of extensions: 288238
Number of successful extensions: 613
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)