Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_O16
         (1053 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56963-5|AAB38122.3|  323|Caenorhabditis elegans Serpentine rece...    34   0.15 
AF003140-9|AAB54171.1|   86|Caenorhabditis elegans Acyl-coenzyme...    28   9.7  

>U56963-5|AAB38122.3|  323|Caenorhabditis elegans Serpentine
           receptor, class v protein30 protein.
          Length = 323

 Score = 34.3 bits (75), Expect = 0.15
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
 Frame = -3

Query: 772 SYFIALQYYALAPLEVPFIYVRT**FYEINMNLFFKIKTFXTKMLNKDGVXK----V*CA 605
           +Y++A++Y++ A    P  Y+RT  FY I   +   I  +   +LN++ + +    + C 
Sbjct: 234 AYYLAVKYFSQAQNTEPVFYIRT--FYPIANGILSYINPYCILILNREFLKQFKAMLKCQ 291

Query: 604 MMMRKIARIYIVHS 563
           ++ +K  RI IV S
Sbjct: 292 LLNKKCKRIAIVPS 305


>AF003140-9|AAB54171.1|   86|Caenorhabditis elegans Acyl-coenzyme a
           binding proteinprotein 1 protein.
          Length = 86

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 446 KEDAXKAYIEIVEGLIASIG 505
           K+DA KAY+ +VE LIA  G
Sbjct: 66  KDDAQKAYVALVEELIAKYG 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,127,832
Number of Sequences: 27780
Number of extensions: 134125
Number of successful extensions: 200
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2803879784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)