Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_O15
         (988 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0311 - 29139883-29140359,29140641-29140788,29140883-291409...    28   10.0 
01_05_0618 + 23723441-23723465,23724733-23724788,23725108-237253...    28   10.0 

>05_07_0311 -
           29139883-29140359,29140641-29140788,29140883-29140959,
           29141227-29141387,29141785-29142803,29142905-29142996,
           29143117-29143256,29143397-29143574
          Length = 763

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 279 PPFXPXLKXLSKKKXPXFXXPPXXFFXGEXKTXXGG 386
           PP  P L  + + K P F  PP  F   E +   GG
Sbjct: 354 PPGPPPLCSICQHKTPVFGKPPRWFSYAELELATGG 389


>01_05_0618 +
           23723441-23723465,23724733-23724788,23725108-23725372,
           23725623-23725759,23725849-23725943,23726033-23727057,
           23727293-23727453,23727816-23727892,23727978-23728125,
           23728364-23728441,23728611-23728838
          Length = 764

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 279 PPFXPXLKXLSKKKXPXFXXPPXXFFXGEXKTXXGG 386
           PP  P L  + + K P F  PP  F   E +   GG
Sbjct: 412 PPGPPPLCSICQHKAPVFGKPPRWFTYAELELATGG 447


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,749,703
Number of Sequences: 37544
Number of extensions: 161892
Number of successful extensions: 393
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2881826040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)