Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_O14
         (1055 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.48 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.63 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.4  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   5.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.48
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 815 PPPPXXXXKKKKXKPPXPXXXKNXXXXPPP 726
           PPPP    ++ + KPP      N    PPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPP 340



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = -3

Query: 816 PPPPXVXXXKKKX*TPPPPXXKKXXXXPPPPP 721
           PPPP           PPP    +    PP PP
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.63
 Identities = 15/50 (30%), Positives = 15/50 (30%)
 Frame = -3

Query: 870 PXXXPPXXXXXXXXXFXXPPPPXVXXXKKKX*TPPPPXXKKXXXXPPPPP 721
           P   PP            P PP           PPPP        PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 771 PPPPXXKKXXXXPPPPP 721
           PPPP  +     PPPPP
Sbjct: 13  PPPPGFEPPSQPPPPPP 29



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 771 PPPPXXKKXXXXPPPPP 721
           PPPP   +    PPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPP 28


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -3

Query: 816 PPPPXVXXXKKKX*TPPPPXXKKXXXXPPPPP 721
           PPPP     K     PPPP   +     PPPP
Sbjct: 208 PPPPM--HHKPGEHMPPPPMHHEPGEHMPPPP 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,790,268
Number of Sequences: 5004
Number of extensions: 23381
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 555217708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)