Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_O14
(1055 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 34 0.20
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.34
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.34
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.34
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 32 0.60
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 30 2.4
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 29 4.2
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 29 4.2
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 5.6
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 5.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 7.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 7.4
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 28 9.7
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 28 9.7
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 28 9.7
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 33.9 bits (74), Expect = 0.20
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 816 PPPPXVXXXKKKX*TPPPPXXKKXXXXPPPPP 721
PPPP + ++ PPPP PPPPP
Sbjct: 71 PPPPPLISILQQAPPPPPPPPPPTLKAPPPPP 102
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.1 bits (72), Expect = 0.34
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -3
Query: 858 PPXXXXXXXXXFXXPPPPXVXXXKKKX*TPPPPXXKKXXXXPPPPP 721
PP PPPP PPPP K PPPPP
Sbjct: 745 PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 29.5 bits (63), Expect = 4.2
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = -3
Query: 870 PXXXPPXXXXXXXXXFXXPPPPXVXXXKKKX*TPPPPXXKKXXXXPPPP 724
P PP PPPP PPP K PPPP
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.1 bits (72), Expect = 0.34
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -3
Query: 858 PPXXXXXXXXXFXXPPPPXVXXXKKKX*TPPPPXXKKXXXXPPPPP 721
PP PPPP PPPP K PPPPP
Sbjct: 745 PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 29.5 bits (63), Expect = 4.2
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = -3
Query: 870 PXXXPPXXXXXXXXXFXXPPPPXVXXXKKKX*TPPPPXXKKXXXXPPPP 724
P PP PPPP PPP K PPPP
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.1 bits (72), Expect = 0.34
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -3
Query: 858 PPXXXXXXXXXFXXPPPPXVXXXKKKX*TPPPPXXKKXXXXPPPPP 721
PP PPPP PPPP K PPPPP
Sbjct: 328 PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373
Score = 29.5 bits (63), Expect = 4.2
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = -3
Query: 870 PXXXPPXXXXXXXXXFXXPPPPXVXXXKKKX*TPPPPXXKKXXXXPPPP 724
P PP PPPP PPP K PPPP
Sbjct: 325 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 32.3 bits (70), Expect = 0.60
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -3
Query: 816 PPPPXVXXXKKKX*TPPPPXXKKXXXXPPPPP 721
PPPP + PPPP PPPPP
Sbjct: 563 PPPPPLPQNLSGAPPPPPPPPPMLGGPPPPPP 594
Score = 31.9 bits (69), Expect = 0.79
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -3
Query: 816 PPPPXVXXXKKKX*TPPPPXXKKXXXXPPPPP 721
PPPP PPPP PPPPP
Sbjct: 562 PPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPP 593
Score = 31.1 bits (67), Expect = 1.4
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -3
Query: 816 PPPPXVXXXKKKX*TPPPPXXKKXXXXPPPPP 721
PPPP PPPP PPPPP
Sbjct: 564 PPPPLPQNLSGAPPPPPPPPPMLGGPPPPPPP 595
Score = 29.1 bits (62), Expect = 5.6
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = -3
Query: 816 PPPPXVXXXKKKX*TPPPPXXKKXXXXPPPPP 721
PPPP + PPPP PPPP
Sbjct: 561 PPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPP 592
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 30.3 bits (65), Expect = 2.4
Identities = 18/57 (31%), Positives = 18/57 (31%), Gaps = 7/57 (12%)
Frame = -3
Query: 870 PXXXPPXXXXXXXXXFXXPPPPXVXXXKKKX*T-------PPPPXXKKXXXXPPPPP 721
P PP PPPP K T PPPP PPPPP
Sbjct: 1338 PPPPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPPPLFSPSMILPPPPP 1394
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 29.5 bits (63), Expect = 4.2
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -3
Query: 816 PPPPXVXXXKKKX*TPPPPXXKKXXXXPPPP 724
PPPP TPPPP K PP P
Sbjct: 76 PPPPLPLSNPPAKPTPPPPPPKPTIRPPPIP 106
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 29.5 bits (63), Expect = 4.2
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -3
Query: 816 PPPPXVXXXKKKX*TPPPPXXKKXXXXPPPP 724
PPPP TPPPP K PP P
Sbjct: 298 PPPPLPLSNPPAKPTPPPPPPKPTIRPPPIP 328
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.1 bits (62), Expect = 5.6
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Frame = -3
Query: 816 PPPPXVXXXKKKX*TPPPPXXKKXXXXPPP--PP 721
PPPP + +PPPP + PPP PP
Sbjct: 123 PPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPP 156
Score = 29.1 bits (62), Expect = 5.6
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -2
Query: 814 PPPPXXXXKKKXXNPPXPXXKKIXXXPPP 728
PPPP + +PP P ++ PPP
Sbjct: 124 PPPPPRKSRAGGSSPPPPPPPRVPRTPPP 152
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.1 bits (62), Expect = 5.6
Identities = 16/52 (30%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Frame = -3
Query: 870 PXXXPPXXXXXXXXXFXXPPPPXVXXX--KKKX*TPPPPXXKKXXXXPPPPP 721
P PP PPPP PPPP PPPPP
Sbjct: 28 PPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPP 79
Score = 28.7 bits (61), Expect = 7.4
Identities = 16/52 (30%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Frame = -3
Query: 870 PXXXPPXXXXXXXXXFXXPPP--PXVXXXKKKX*TPPPPXXKKXXXXPPPPP 721
P PP PPP P PPPP PPPPP
Sbjct: 29 PCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPP 80
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 7.4
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = -3
Query: 816 PPPPXVXXXKKKX*TPPPPXXKKXXXXPPPPP 721
P PP + PPPP PPPPP
Sbjct: 272 PMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPP 303
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 7.4
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = -3
Query: 816 PPPPXVXXXKKKX*TPPPPXXKKXXXXPPPPP 721
P PP + PPPP PPPPP
Sbjct: 282 PMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPP 313
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 28.3 bits (60), Expect = 9.7
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Frame = -3
Query: 816 PPPPX--VXXXKKKX*TPPPPXXKKXXXXPPPPP 721
PPPP + PPPP PPPPP
Sbjct: 218 PPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPPPP 251
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 28.3 bits (60), Expect = 9.7
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Frame = -3
Query: 816 PPPPX--VXXXKKKX*TPPPPXXKKXXXXPPPPP 721
PPPP + PPPP PPPPP
Sbjct: 204 PPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPPPP 237
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 28.3 bits (60), Expect = 9.7
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Frame = -3
Query: 816 PPPPX--VXXXKKKX*TPPPPXXKKXXXXPPPPP 721
PPPP + PPPP PPPPP
Sbjct: 204 PPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPPPP 237
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,078,209
Number of Sequences: 27780
Number of extensions: 229217
Number of successful extensions: 1013
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2814342022
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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