Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_O13
         (956 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +3

Query: 537 PXXXXPPXXXXXPPPXXPPPXXPXXXP 617
           P    PP     PPP  PP   P   P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 787 PXPPXXPPXXXPPXXPP 837
           P P   PP   PP  PP
Sbjct: 40  PNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
 Frame = +1

Query: 430 PPPXXPXPPPXPXXR-XXPXPXXPPXXXXXPPXPXXPP 540
           P    P P P P      P    PP     PP P  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPP-PGGPP 52



 Score = 21.8 bits (44), Expect = 9.4
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = +2

Query: 878 PXPXXXXXPXHXXPXPPPXPXPXPPP 955
           P P     P       PP P   PPP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 21.8 bits (44), Expect = 9.4
 Identities = 11/34 (32%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
 Frame = +2

Query: 431 PH--PXXPXXPPXXXPAXPXPPXXPPXXPXXXXP 526
           PH  P  P       P+   PP  PP  P    P
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 571  PPPPXPPP 594
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 926 PPXPXPXPPP 955
           PP P P PPP
Sbjct: 338 PPKPAPPPPP 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,849
Number of Sequences: 438
Number of extensions: 9320
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31444140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)