Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_O11
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    33   0.073
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    32   0.097
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.39 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.1  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    27   2.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.7  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 32.7 bits (71), Expect = 0.073
 Identities = 28/118 (23%), Positives = 30/118 (25%)
 Frame = +3

Query: 516  PPPPGXXGXXFXAPPPPPXXKTXXPXXXGGXGVXPPPXGGXXXPPKTGGNPQKXFXXXGP 695
            PP P        APPP P   +  P         P P G    P  +G  P        P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPS-------IPAPSGAPPVPAPSGIPPVPKPSVAAP 1102

Query: 696  QXXXXPXXXXXXGGFXXXPPPPDXXQKKXPPXXXGGPPPXXXNXXXXPPPXXPXXXPP 869
                              PP P       P     G PP        PP   P   PP
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 32.3 bits (70), Expect = 0.097
 Identities = 27/123 (21%), Positives = 30/123 (24%)
 Frame = +3

Query: 510 KXPPPPGXXGXXFXAPPPPPXXKTXXPXXXGGXGVXPPPXGGXXXPPKTGGNPQKXFXXX 689
           K P   G        PPPPP             G   PP       P TG  P       
Sbjct: 324 KPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSR 383

Query: 690 GPQXXXXPXXXXXXGGFXXXPPPPDXXQKKXPPXXXGGPPPXXXNXXXXPPPXXPXXXPP 869
                  P            PP  +  +   PP     PP    +     PP  P   P 
Sbjct: 384 AVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPT--PPSLPPSAPPSLPPSAPPSLPM 441

Query: 870 XXP 878
             P
Sbjct: 442 GAP 444


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 516 PPPPGXXGXXFXAPPPPP 569
           PPPPG  G     PPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPP 782



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
 Frame = +3

Query: 510 KXPPPPGXXGXXFXAPPPPPXXKTXXPXXXGGXGVXPPPXG--GXXXPP 650
           K PPPP         P P P          GG    PPP G  G   PP
Sbjct: 730 KSPPPP-PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 516 PPPPGXXGXXFXAPPPPP 569
           PPPP   G     PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/46 (32%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
 Frame = +3

Query: 750 PPPPDXXQKKXPPXXXGGPPPXXXNXXXXPPPXXP---XXXPPXXP 878
           PPPP        P     PPP        PPP  P      PP  P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -2

Query: 340 PPPPXXFFFXGGPXPPPXGGXXXXVXFXPPP 248
           P PP      G P PPP  G        PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/45 (33%), Positives = 16/45 (35%)
 Frame = +2

Query: 479 GGGGGGFXXKKXPPPPXXXGXXFXGXXXXXXXKNXXPXXXGGGXG 613
           GGG GGF      PPP   G    G        +      GGG G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPG 231


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +3

Query: 753 PPPDXXQKKXPPXXXGGPPPXXXNXXXXPPPXXP 854
           PPP   Q+  PP      PP        PP   P
Sbjct: 206 PPPPPPQQNYPPAASSSAPPMQYQQTAYPPQQAP 239


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 516 PPPPGXXGXXFXAPPPPP 569
           PPPPG        PPPPP
Sbjct: 13  PPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,959,901
Number of Sequences: 5004
Number of extensions: 29506
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)