Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_O03
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2...    90   3e-19
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    32   0.095
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   6.2  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   6.2  

>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 90.2 bits (214), Expect = 3e-19
 Identities = 44/78 (56%), Positives = 51/78 (65%)
 Frame = +2

Query: 122 EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINENDTPTS 301
           EHINLKV+GQDN  V FKIKK T   KLM  YC R G SM  +RF  DG+ I  + TP  
Sbjct: 34  EHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQTPAE 93

Query: 302 LEMEEGDTIEVYQQQTGG 355
           L+ME+GD IE   +Q GG
Sbjct: 94  LDMEDGDQIEAVLEQLGG 111


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 32.3 bits (70), Expect = 0.095
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 194 LRKLMNAYCDRAGLSM-QVVRFRFDGQPINENDTPTSLEMEEGDTIEV 334
           ++ L+  YC    +S  + +R  F+G+ ++ ND   S E+E+ D + V
Sbjct: 356 VKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSV 403


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 208 HQFPERCVFLYFELYNCI 155
           H+FP  C+F  F  YNCI
Sbjct: 533 HRFP--CIFTSFSCYNCI 548


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 208 HQFPERCVFLYFELYNCI 155
           H+FP  C+F  F  YNCI
Sbjct: 533 HRFP--CIFTSFSCYNCI 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,383
Number of Sequences: 5004
Number of extensions: 41191
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)