Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_O03
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782 94 2e-19
01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532 93 3e-19
07_03_0989 + 23161020-23161412 52 6e-07
07_03_0990 + 23173868-23174200 50 2e-06
01_06_1364 + 36684937-36685281 50 3e-06
01_05_0651 + 23930455-23930457,23930543-23930636,23930764-239308... 47 2e-05
07_03_0988 + 23160028-23160360 44 2e-04
01_04_0034 + 15318509-15319567 33 0.23
>01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782
Length = 101
Score = 93.9 bits (223), Expect = 2e-19
Identities = 43/81 (53%), Positives = 54/81 (66%)
Frame = +2
Query: 113 GXNEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINENDT 292
G HINLKV GQD V F+IK+ T L+KLMNAYCDR + ++ + F FDG+ +N T
Sbjct: 17 GGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDIKSIAFLFDGRRLNAEQT 76
Query: 293 PTSLEMEEGDTIEVYQQQTGG 355
P LEME+GD I+ QTGG
Sbjct: 77 PDQLEMEDGDEIDAMLHQTGG 97
>01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532
Length = 100
Score = 93.1 bits (221), Expect = 3e-19
Identities = 43/81 (53%), Positives = 52/81 (64%)
Frame = +2
Query: 113 GXNEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINENDT 292
G HINLKV GQD V F+IK+ T L+KLMNAYCDR + M + F FDG+ + T
Sbjct: 16 GGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQT 75
Query: 293 PTSLEMEEGDTIEVYQQQTGG 355
P LEME+GD I+ QTGG
Sbjct: 76 PDELEMEDGDEIDAMLHQTGG 96
>07_03_0989 + 23161020-23161412
Length = 130
Score = 52.0 bits (119), Expect = 6e-07
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = +2
Query: 122 EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQ--VVRFRFDGQPINENDTP 295
E++ LKV G D V + + L+ LM+ Y DR+ +Q RF FDG+ + TP
Sbjct: 37 EYVTLKVQGTDGRAVYRTMLRTEELQGLMDFYYDRSHGRVQRGTGRFLFDGRRLRGWQTP 96
Query: 296 TSLEMEEGDTIEVYQQQTGGVS 361
L+ME+GD + +++ GG +
Sbjct: 97 AELQMEDGDEVNFFEELIGGAA 118
>07_03_0990 + 23173868-23174200
Length = 110
Score = 50.0 bits (114), Expect = 2e-06
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +2
Query: 122 EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQ--VVRFRFDGQPINENDTP 295
E++ LKV D V ++ L+ LM+ Y DRA +Q RF +DG+ ++ TP
Sbjct: 29 EYVTLKVQDTDGRAVYRTMRWTEQLQGLMDFYYDRAHGRVQRGTGRFLYDGRRLSGWQTP 88
Query: 296 TSLEMEEGDTIEVYQQQTGGVS 361
L+ME+GD ++ +++ GG +
Sbjct: 89 AELDMEDGDEVDFFEELIGGAA 110
>01_06_1364 + 36684937-36685281
Length = 114
Score = 49.6 bits (113), Expect = 3e-06
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +2
Query: 86 NLKMADXKXGXNEH-INLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRF-R 259
+LK+ + G I + V Q A V F IK LR++M+ YC + L + V+F
Sbjct: 17 DLKLVKAEPGTGPGLITITVTSQTFADVYFAIKPRVKLRRVMDLYCGKHSLDPKTVKFID 76
Query: 260 FDGQPINENDTPTSLEMEEGDTIEVYQQQTGGVSL 364
DG+ + TP + +++G TI + Q GG +
Sbjct: 77 DDGRFVRSEQTPEEVGLQDGSTISLAIDQQGGACI 111
>01_05_0651 +
23930455-23930457,23930543-23930636,23930764-23930849,
23930930-23931108,23932275-23932482,23932808-23932975
Length = 245
Score = 47.2 bits (107), Expect = 2e-05
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +2
Query: 74 SHHINLKMADXKXGXNEHINLKVLGQDNA-IVQFKIKKHTPLRKLMNAYCDRAGLSMQVV 250
+ HI+L + + E + + V QD A QF++ K KL AY + LS+ +
Sbjct: 155 TEHIDLDKSPERHEAREKVVVTV--QDKAGHHQFRLYKDEKFGKLFRAYAKKVNLSVADL 212
Query: 251 RFRFDGQPINENDTPTSLEMEEGDTIEV 334
F FDG ++ TP L +E+ D +EV
Sbjct: 213 TFAFDGDKVDAESTPEDLGLEDEDMVEV 240
>07_03_0988 + 23160028-23160360
Length = 110
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +2
Query: 128 INLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRA-GLSMQVVRFRFDGQPINENDTPTSL 304
I LKV+ Q++ ++ I+ L+ +M+ Y +A ++ F FDG + + TP L
Sbjct: 21 ITLKVMDQEDRRIRHTIRMADKLQVVMDMYYAKAPDVTYGTGTFLFDGIRLKGDMTPMGL 80
Query: 305 EMEEGDTIEVYQQQTGG 355
EM +GDT++ + GG
Sbjct: 81 EMVDGDTVDFFPVMIGG 97
>01_04_0034 + 15318509-15319567
Length = 352
Score = 33.5 bits (73), Expect = 0.23
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +2
Query: 128 INLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSM--QVVRFRFDGQPINENDTPTS 301
+ + +L A + +++ L+ LM+ R SM ++G+ + ++ TP
Sbjct: 276 VTIDLLTMVKAKRTYTLRRTDKLQGLMDLCLSREPASMYRHGCVLIYEGRRVQDSQTPDD 335
Query: 302 LEMEEGDTIEVYQQQTG 352
L++E+GDTI +Q G
Sbjct: 336 LKLEDGDTIHAIARQVG 352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,545,598
Number of Sequences: 37544
Number of extensions: 245335
Number of successful extensions: 358
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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