Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_O03
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X99600-1|CAA67914.1|   91|Caenorhabditis elegans ubiquitin-like ...    92   4e-19
U94830-1|AAB67608.1|   91|Caenorhabditis elegans ubiquitin-like ...    92   4e-19
AF043701-6|AAK18969.1|   91|Caenorhabditis elegans Sumo (ubiquit...    92   4e-19
U09415-1|AAA82164.1|  655|Caenorhabditis elegans Ceprp21 protein.      34   0.12 
AF106576-5|AAC78179.1|  655|Caenorhabditis elegans Yeast prp (sp...    34   0.12 
AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical ...    32   0.63 

>X99600-1|CAA67914.1|   91|Caenorhabditis elegans ubiquitin-like
           protein protein.
          Length = 91

 Score = 92.3 bits (219), Expect = 4e-19
 Identities = 45/90 (50%), Positives = 64/90 (71%), Gaps = 3/90 (3%)
 Frame = +2

Query: 95  MADX--KXGXN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFD 265
           MAD   + G N E+I +KV+GQD+  V F++K  T + KL  +Y DR G+++  +RF FD
Sbjct: 1   MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFD 60

Query: 266 GQPINENDTPTSLEMEEGDTIEVYQQQTGG 355
           G+ IN++DTP +LEME+ D IEVYQ+Q GG
Sbjct: 61  GRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90


>U94830-1|AAB67608.1|   91|Caenorhabditis elegans ubiquitin-like
           protein protein.
          Length = 91

 Score = 92.3 bits (219), Expect = 4e-19
 Identities = 45/90 (50%), Positives = 64/90 (71%), Gaps = 3/90 (3%)
 Frame = +2

Query: 95  MADX--KXGXN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFD 265
           MAD   + G N E+I +KV+GQD+  V F++K  T + KL  +Y DR G+++  +RF FD
Sbjct: 1   MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFD 60

Query: 266 GQPINENDTPTSLEMEEGDTIEVYQQQTGG 355
           G+ IN++DTP +LEME+ D IEVYQ+Q GG
Sbjct: 61  GRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90


>AF043701-6|AAK18969.1|   91|Caenorhabditis elegans Sumo
           (ubiquitin-related) homologprotein 1 protein.
          Length = 91

 Score = 92.3 bits (219), Expect = 4e-19
 Identities = 45/90 (50%), Positives = 64/90 (71%), Gaps = 3/90 (3%)
 Frame = +2

Query: 95  MADX--KXGXN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFD 265
           MAD   + G N E+I +KV+GQD+  V F++K  T + KL  +Y DR G+++  +RF FD
Sbjct: 1   MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFD 60

Query: 266 GQPINENDTPTSLEMEEGDTIEVYQQQTGG 355
           G+ IN++DTP +LEME+ D IEVYQ+Q GG
Sbjct: 61  GRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90


>U09415-1|AAA82164.1|  655|Caenorhabditis elegans Ceprp21 protein.
          Length = 655

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
 Frame = +2

Query: 89  LKMADXKXGXNEHI-NLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFD 265
           LK  +     N H+      G D +IVQF I+   P+ +L     DR G+ +   +   D
Sbjct: 563 LKKVNGAISLNVHLPQAPEHGMDGSIVQFTIQVTAPMSELKQQIQDRYGMPVGKQKLMSD 622

Query: 266 GQPINENDTPTSLEMEEGDTIEVYQQQTGG 355
           G  + +N +     + +   I +  ++ GG
Sbjct: 623 GLFVKDNMSSAFYNLADRTAIYLQVKERGG 652


>AF106576-5|AAC78179.1|  655|Caenorhabditis elegans Yeast prp
           (splicing factor) relatedprotein 21 protein.
          Length = 655

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
 Frame = +2

Query: 89  LKMADXKXGXNEHI-NLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFD 265
           LK  +     N H+      G D +IVQF I+   P+ +L     DR G+ +   +   D
Sbjct: 563 LKKVNGAISLNVHLPQAPEHGMDGSIVQFTIQVTAPMSELKQQIQDRYGMPVGKQKLMSD 622

Query: 266 GQPINENDTPTSLEMEEGDTIEVYQQQTGG 355
           G  + +N +     + +   I +  ++ GG
Sbjct: 623 GLFVKDNMSSAFYNLADRTAIYLQVKERGG 652


>AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical
            protein H04J21.1 protein.
          Length = 1032

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 14/69 (20%), Positives = 35/69 (50%)
 Frame = +2

Query: 149  QDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINENDTPTSLEMEEGDTI 328
            Q   ++   ++++  L +L     ++ G+  + +R  ++G+PI+  DTP SL +      
Sbjct: 930  QQLEVLHSHVEENEKLGRLDKRISEKIGVDAKFIRVTYNGRPIDPMDTPYSLGLSHTANF 989

Query: 329  EVYQQQTGG 355
             ++ + + G
Sbjct: 990  HMFFKPSPG 998


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,273,497
Number of Sequences: 27780
Number of extensions: 238646
Number of successful extensions: 487
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)