Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_O02
         (878 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9VLJ9 Cluster: 39S ribosomal protein L51, mitochondria...    74   6e-12
UniRef50_UPI00015B4107 Cluster: PREDICTED: similar to mitochondr...    56   9e-07
UniRef50_Q22438 Cluster: 39S ribosomal protein L51, mitochondria...    38   0.25 
UniRef50_UPI00005878E2 Cluster: PREDICTED: hypothetical protein;...    36   1.0  
UniRef50_Q5D9U3 Cluster: SJCHGC03337 protein; n=1; Schistosoma j...    36   1.8  

>UniRef50_Q9VLJ9 Cluster: 39S ribosomal protein L51, mitochondrial
           precursor; n=6; Endopterygota|Rep: 39S ribosomal protein
           L51, mitochondrial precursor - Drosophila melanogaster
           (Fruit fly)
          Length = 174

 Score = 73.7 bits (173), Expect = 6e-12
 Identities = 39/98 (39%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
 Frame = +2

Query: 338 GLWPKSE-GKAXPXPEYXPDNPWSXKKALXGQXDYXXXXGPGNXXPVKTLYNIPSXXRGV 514
           GL P  + G+  P P Y P N WS K+AL GQ DY    G     PVK LY++PS  RGV
Sbjct: 62  GLLPHVDNGQKLPMPVYRPKNAWSKKRALFGQNDYIDILGNDRLHPVKVLYSLPSWLRGV 121

Query: 515 SGHEYHILLXXXXXXXXXXXXXXXXXXXXEIQKRLSXL 628
           SG+EY +LL                    E++KR+  L
Sbjct: 122 SGNEYQVLLRKRKLLEKSKYPIARPTKWREMEKRILYL 159


>UniRef50_UPI00015B4107 Cluster: PREDICTED: similar to mitochondrial
           ribosomal protein, L51, putative isoform 1; n=1; Nasonia
           vitripennis|Rep: PREDICTED: similar to mitochondrial
           ribosomal protein, L51, putative isoform 1 - Nasonia
           vitripennis
          Length = 161

 Score = 56.4 bits (130), Expect = 9e-07
 Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +2

Query: 371 PXPEYXPDNPWSXKKALXGQXDYXXXXGPGNXXPVKTLYNIPSXXRGVSG-HEYHILL 541
           P P Y PDN WS +KAL GQ DY    G       K +YN+P   RGV G +E  +L+
Sbjct: 60  PMPIYRPDNSWSERKALFGQNDYIDILGTQELPVTKIMYNVPKWLRGVRGDNELQVLI 117


>UniRef50_Q22438 Cluster: 39S ribosomal protein L51, mitochondrial
           precursor; n=2; Caenorhabditis|Rep: 39S ribosomal
           protein L51, mitochondrial precursor - Caenorhabditis
           elegans
          Length = 199

 Score = 38.3 bits (85), Expect = 0.25
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 377 PEYXPDNPWSXKKALXGQXDYXXXXGPGNXXPVKTLYNIPSXXRGVSG 520
           P Y   + WS + A  GQ DY    G G+  P +  Y+ P+  RG  G
Sbjct: 71  PAYKVRDQWSDEAARFGQNDYIDLLGDGSVHPAQLQYHTPTWLRGFPG 118


>UniRef50_UPI00005878E2 Cluster: PREDICTED: hypothetical protein;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 126

 Score = 36.3 bits (80), Expect = 1.0
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +2

Query: 362 KAXPXPEYXPDNPWSXKKALXGQXDYXXXXGPGNXXPVKTLYNIPSXXRGVSGHEYHILL 541
           K  P P+    + WS K+AL G+ DY    G G     K +   P   RG  G+E  +++
Sbjct: 25  KKLPAPKKSEKDYWSEKRALFGENDYKDILGDGTYSLRKNVKVGPWWMRGWKGNELQMMI 84


>UniRef50_Q5D9U3 Cluster: SJCHGC03337 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC03337 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 134

 Score = 35.5 bits (78), Expect = 1.8
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +2

Query: 335 GGLWPKSE--GKAXPXPEYXPDNPWSXKKALXGQXDYXXXXGPGNXXPVKTLYNIPSXXR 508
           GGL P+ +   K    PE+ P + WS  +A  GQ DY    G G   P +  Y  P    
Sbjct: 17  GGLLPRLDYTDKQVLLPEHKPRDLWSPHRAYFGQNDYIDILGDGKIKP-RDFYTGPPWAL 75

Query: 509 GVSGHEY 529
           G + +EY
Sbjct: 76  G-ARNEY 81


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 301,224,103
Number of Sequences: 1657284
Number of extensions: 3079999
Number of successful extensions: 3890
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3889
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 78702453312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)