Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_O01
         (1233 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   1.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   3.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   3.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   5.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   9.3  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   9.3  

>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = -1

Query: 1032 GGWXXGRGXFGXXGXLWXRGGXXXVXGVGVGG 937
            GG   GRG FG  G    RGG     G G GG
Sbjct: 447  GGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGG 478


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +2

Query: 929  PXXPPTPTPXTXXXPPLLHKXPXXPXXPLPXXHPPT 1036
            P  PP   P     PP+    P  P  PLP    P+
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +1

Query: 958  HXXXSPPX-PQTXPXPKXPSPXXPSPYXXIPPSAHXXP 1068
            H   +PP  PQ+   P+  +P  P P   +PP     P
Sbjct: 1685 HPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP 1722


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/48 (29%), Positives = 16/48 (33%)
 Frame = +2

Query: 929  PXXPPTPTPXTXXXPPLLHKXPXXPXXPLPXXHPPTHXSLHPRTXTLP 1072
            P  P  P P     PP+  K P  P    P   P       P   +LP
Sbjct: 144  PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP 191


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 22/70 (31%), Positives = 25/70 (35%), Gaps = 10/70 (14%)
 Frame = +2

Query: 917  SPXHPXXPPTPTPXT-XXXPPLLHKXPXXPXXPLPXXH---------PPTHXSLHPRTXT 1066
            +P  P  PPT T  T    PP           PLP            PPT  S  P T T
Sbjct: 299  TPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPT 358

Query: 1067 LPXTKVTPXS 1096
            +P T  +  S
Sbjct: 359  VPPTSTSSTS 368



 Score = 26.6 bits (56), Expect = 7.1
 Identities = 22/70 (31%), Positives = 25/70 (35%), Gaps = 10/70 (14%)
 Frame = +2

Query: 917  SPXHPXXPPTPTPXTXXX-PPLLHKXPXXPXXPLPXXH---------PPTHXSLHPRTXT 1066
            +P  P  PPT T  T    PP           PLP            PPT  S  P T T
Sbjct: 245  TPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPT 304

Query: 1067 LPXTKVTPXS 1096
            +P T  +  S
Sbjct: 305  VPPTSTSSTS 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 939 PQPPLPPXXXXPPXSTN 989
           P PP PP    PP STN
Sbjct: 236 PAPPPPPPPTLPPQSTN 252


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 20/100 (20%), Positives = 31/100 (31%)
 Frame = +2

Query: 920  PXHPXXPPTPTPXTXXXPPLLHKXPXXPXXPLPXXHPPTHXSLHPRTXTLPXTKVTPXSX 1099
            P  P  P  P   +   PP+    P  P  P P   P     + P   ++P   V P + 
Sbjct: 560  PQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP-----VVPEAPSVPQPPVAPVAP 614

Query: 1100 XXXXXXXXXXXXXXXXXSTAXRPPSXLHXLDXTSPPXTPS 1219
                              +  +PP+     +  S P  P+
Sbjct: 615  EVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPA 654


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,052,257
Number of Sequences: 5004
Number of extensions: 21385
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 669373152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)