Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_O01
(1233 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 45 1e-04
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 37 0.034
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 37 0.034
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 37 0.034
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 36 0.078
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 33 0.42
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 33 0.42
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 33 0.55
Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical pr... 32 0.73
U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical pr... 31 1.3
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 31 1.7
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 30 2.9
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 30 3.9
AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical ... 30 3.9
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 29 5.1
U97196-12|AAB52456.2| 564|Caenorhabditis elegans Hypothetical p... 29 6.8
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 6.8
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 29 6.8
AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical ... 29 6.8
AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical ... 29 6.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 6.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 6.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 6.8
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 29 8.9
U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical pr... 29 8.9
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 8.9
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 29 8.9
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 29 8.9
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 29 8.9
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 29 8.9
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 29 8.9
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 44.8 bits (101), Expect = 1e-04
Identities = 52/173 (30%), Positives = 57/173 (32%), Gaps = 3/173 (1%)
Frame = -1
Query: 1032 GGWXXGR-GXFGXXGXLWXRGGXXXVXGVGVGGXXGWXGDXXGXXRKGGRXCEXXEXGXX 856
GGW R G G G GG G G GG W G+ G GG + G
Sbjct: 33 GGWGGNRWGGGGGPGGWGNNGGGGWGRGGGRGG-GDWGGNNGGGGNWGGNGGGRGDWGGN 91
Query: 855 RAGGX*XSEQGR*EXXMXEXXVRERAXRXEGXGR*RXGGGSXDXXVWXXEYGGXXGXEXG 676
GG +G + G G GGG+ D GG G G
Sbjct: 92 GGGGRGGGGRG------------DWGGNNNGGGGNWGGGGNNDGGWGGNNGGGGGGRGGG 139
Query: 675 XXGGXVR--XGGLXRXDXXGXXGGGRV*GXXXXXGXGGTGXXKXXXGMRIGEG 523
GG R G D G GGGR G G GG G G RI EG
Sbjct: 140 GRGGDGRGPPGSNGGGDWGGNGGGGR--GGGGGRGGGGGG----GAGERIAEG 186
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 36.7 bits (81), Expect = 0.034
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = -1
Query: 1047 RDXXVGGWXXGRGXFGXXGXLWXRGGXXXVXGVGVGGXXGWXGD-XXGXXRKGGRXCEXX 871
RD GG+ G G G G RGG G G GG G+ GD G ++GG
Sbjct: 212 RDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGW 271
Query: 870 EXGXXRAGGX*XSEQG 823
+ GG +QG
Sbjct: 272 GGPQQQQGGGGWGQQG 287
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 36.7 bits (81), Expect = 0.034
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = -1
Query: 1047 RDXXVGGWXXGRGXFGXXGXLWXRGGXXXVXGVGVGGXXGWXGD-XXGXXRKGGRXCEXX 871
RD GG+ G G G G RGG G G GG G+ GD G ++GG
Sbjct: 174 RDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGW 233
Query: 870 EXGXXRAGGX*XSEQG 823
+ GG +QG
Sbjct: 234 GGPQQQQGGGGWGQQG 249
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 36.7 bits (81), Expect = 0.034
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = -1
Query: 1047 RDXXVGGWXXGRGXFGXXGXLWXRGGXXXVXGVGVGGXXGWXGD-XXGXXRKGGRXCEXX 871
RD GG+ G G G G RGG G G GG G+ GD G ++GG
Sbjct: 212 RDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGW 271
Query: 870 EXGXXRAGGX*XSEQG 823
+ GG +QG
Sbjct: 272 GGPQQQQGGGGWGQQG 287
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical protein
C34D4.11 protein.
Length = 136
Score = 35.5 bits (78), Expect = 0.078
Identities = 25/70 (35%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Frame = -1
Query: 1032 GGWXXGRGXFGXXGXLWXRGGXXXVXGVGVGGXXG-------WXGDXXGXXRKGGRXCEX 874
GGW GR +G G W RGG G G GG G W G+ G GGR
Sbjct: 41 GGW--GRPGWGGGGPGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGG 98
Query: 873 XEXGXXRAGG 844
G GG
Sbjct: 99 GGGGGRGGGG 108
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 33.1 bits (72), Expect = 0.42
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Frame = -1
Query: 1047 RDXXVGGWXXGRGXFGXXGXLWXRGGXXXVXGVGVGGXXGWXGD--XXGXXRKGGRXCEX 874
RD GG+ G G G G RGG G G GG G+ G G ++GG
Sbjct: 174 RDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGG 233
Query: 873 XEXGXXRAGGX*XSEQG 823
+ GG +QG
Sbjct: 234 WGGPQQQQGGGGWGQQG 250
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 33.1 bits (72), Expect = 0.42
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Frame = -1
Query: 1047 RDXXVGGWXXGRGXFGXXGXLWXRGGXXXVXGVGVGGXXGWXGD--XXGXXRKGGRXCEX 874
RD GG+ G G G G RGG G G GG G+ G G ++GG
Sbjct: 212 RDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGG 271
Query: 873 XEXGXXRAGGX*XSEQG 823
+ GG +QG
Sbjct: 272 WGGPQQQQGGGGWGQQG 288
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 32.7 bits (71), Expect = 0.55
Identities = 39/146 (26%), Positives = 44/146 (30%), Gaps = 2/146 (1%)
Frame = -1
Query: 954 GVGVGGXXGWXGDXXGXXRKGGRXCEXXEXGXXRAGGX*XSEQGR*EXXMXEXXVRERAX 775
G G+G GW G G G R GG S GR
Sbjct: 29 GSGIGSSGGWGGSDASAGASAG------GTGGGRGGGRGGSGGGR-GGGSGGGRGGSGGA 81
Query: 774 RXEGXGR*RXGGGSXDXXVWXXEYGGXXGXEXGXXGGXVRXGGLXRXDXXGXXG--GGRV 601
G G G G D +GG G G G GG R D G GG+
Sbjct: 82 GAGGSGSGSGGWGGQDGGSSAGGWGGSQGGSQGGSSGG--WGGSSRSDSGSGQGGWGGQQ 139
Query: 600 *GXXXXXGXGGTGXXKXXXGMRIGEG 523
G G GG+ + G R G G
Sbjct: 140 GGNSNAGGWGGSQGGQNGGGGRGGSG 165
Score = 30.3 bits (65), Expect = 2.9
Identities = 41/157 (26%), Positives = 46/157 (29%), Gaps = 2/157 (1%)
Frame = -1
Query: 1032 GGWXXGRGXFGXXGXLWXRGGXXXVXGVGVGGXXGWXGDXXGXXRKGGRXCEXXEXGXXR 853
GG GRG G GG G G GG G G + G
Sbjct: 54 GGRGGGRGGSGGGRGGGSGGGRGGSGGAGAGGSGSGSGGWGG------------QDGGSS 101
Query: 852 AGGX*XSEQGR*EXXMXEXXVRERAXRXEGXGR-*RXGGGSXDXXVWXXEYGG-XXGXEX 679
AGG S+ G R+ G G GG+ + W GG G
Sbjct: 102 AGGWGGSQGGSQGGSSGGWGGSSRSDSGSGQGGWGGQQGGNSNAGGWGGSQGGQNGGGGR 161
Query: 678 GXXGGXVRXGGLXRXDXXGXXGGGRV*GXXXXXGXGG 568
G GG GG G GG G G GG
Sbjct: 162 GGSGGQGGWGGSQDGGSQGGWGGQNGGGQGGNQGGGG 198
>Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical protein
F43C1.1 protein.
Length = 1036
Score = 32.3 bits (70), Expect = 0.73
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +2
Query: 920 PXHPXXPPTPTPXTXXXPPLLHKXPXXPXXPLPXXHPPTHXSLH 1051
P + PP P P P + H+ P P PLP PP S H
Sbjct: 939 PEYHPSPPVPPPI----PAIRHRTPSPPPPPLPSSTPPPVSSEH 978
>U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical protein
F07C4.7 protein.
Length = 180
Score = 31.5 bits (68), Expect = 1.3
Identities = 37/139 (26%), Positives = 39/139 (28%), Gaps = 1/139 (0%)
Frame = -1
Query: 1017 GRGXFGXXGX-LWXRGGXXXVXGVGVGGXXGWXGDXXGXXRKGGRXCEXXEXGXXRAGGX 841
G G G G W GG G GG GW G GG G R G
Sbjct: 33 GSGGPGPRGPGEWNNGGGRG----GFGGNNGWNNGGGGFNGNGG--FNGGGRGGGRGGNG 86
Query: 840 *XSEQGR*EXXMXEXXVRERAXRXEGXGR*RXGGGSXDXXVWXXEYGGXXGXEXGXXGGX 661
+ G G GR GGG +G G G GG
Sbjct: 87 GFGDNGGLRGGNGGGRGGNGGFDDNGGGRGGNGGGRGG----TGGFGDNGGGRGGNGGGR 142
Query: 660 VRXGGLXRXDXXGXXGGGR 604
GG G GGGR
Sbjct: 143 GGNGGGNNGGGRGGNGGGR 161
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 31.1 bits (67), Expect = 1.7
Identities = 21/61 (34%), Positives = 21/61 (34%)
Frame = -1
Query: 705 YGGXXGXEXGXXGGXVRXGGLXRXDXXGXXGGGRV*GXXXXXGXGGTGXXKXXXGMRIGE 526
YGG G G G GG D G GGG G G GG G G G
Sbjct: 137 YGGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGGMGGGGYGGGGDGGYGGGGFGGGGMGGY 196
Query: 525 G 523
G
Sbjct: 197 G 197
Score = 29.5 bits (63), Expect = 5.1
Identities = 21/61 (34%), Positives = 21/61 (34%)
Frame = -1
Query: 744 GGGSXDXXVWXXEYGGXXGXEXGXXGGXVRXGGLXRXDXXGXXGGGRV*GXXXXXGXGGT 565
GGG YGG G G GG GG G GGG G G GG
Sbjct: 116 GGGYGGGGDGGGGYGGYGGGGYGGMGGG--PGGYGMGGYGGGGGGGGDFGGYGGGGMGGG 173
Query: 564 G 562
G
Sbjct: 174 G 174
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 30.3 bits (65), Expect = 2.9
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 982 PQTXPXPKXPSPXXPSPYXXIPPSAHXXPPXNQSHSXFL 1098
P P + P P P P+ PP H PP HS ++
Sbjct: 123 PAPAPYQQQPPPPPPPPHYP-PPPPHYPPPPPAPHSAYI 160
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
F46C3.3 protein.
Length = 2557
Score = 29.9 bits (64), Expect = 3.9
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +3
Query: 573 PXXXXXXPLTLSPXPXXP--LHXPXPIP-PTXPXPXP 674
P P+T SP P P + P P+P PT P P P
Sbjct: 1695 PITPAQPPITQSPVPSEPVVVRTPSPVPQPTPPPPPP 1731
>AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical
protein Y66H1A.4 protein.
Length = 244
Score = 29.9 bits (64), Expect = 3.9
Identities = 20/44 (45%), Positives = 21/44 (47%)
Frame = -1
Query: 1017 GRGXFGXXGXLWXRGGXXXVXGVGVGGXXGWXGDXXGXXRKGGR 886
GRG FG G RGG G G GG G GD G +GGR
Sbjct: 173 GRGGFGRGGGGGFRGGDRGGFGGGRGGFRG--GDRGGF--RGGR 212
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical protein
T10B10.1 protein.
Length = 428
Score = 29.5 bits (63), Expect = 5.1
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +1
Query: 949 HSXHXXXSPPXPQ-TXPXPKXPSPXXPSPYXXIPPSAHXXPP 1071
H SP P + P P PSP PSP P+ PP
Sbjct: 362 HPSPSYPSPSYPSPSYPSPSYPSPSYPSPSYPAEPAYSVPPP 403
>U97196-12|AAB52456.2| 564|Caenorhabditis elegans Hypothetical
protein B0207.1 protein.
Length = 564
Score = 29.1 bits (62), Expect = 6.8
Identities = 12/41 (29%), Positives = 15/41 (36%)
Frame = +2
Query: 929 PXXPPTPTPXTXXXPPLLHKXPXXPXXPLPXXHPPTHXSLH 1051
P PP P P + P P P P HPP ++
Sbjct: 121 PQCPPPPVPHPPQITQMAPILPTSPAPPPPIPHPPQRAQMN 161
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 29.1 bits (62), Expect = 6.8
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +1
Query: 970 SPPXPQTXPXPKXPSPXXPSPYXXIPPSAHXXPPXNQSH 1086
+PP PQ P PSP +P P PP SH
Sbjct: 163 TPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPPRLNSH 201
Score = 28.7 bits (61), Expect = 8.9
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Frame = +1
Query: 970 SPPXPQTXPXPKXPSPXXPSPY--XXIPPSAHXXPP 1071
SPP P P+ P P P P PPS PP
Sbjct: 137 SPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPP 172
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 29.1 bits (62), Expect = 6.8
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +2
Query: 938 PPTPTPXTXXXPPLLHKXPXXPXXPLPXXHPP 1033
PP P P PP + P P P P PP
Sbjct: 56 PPPPCPAQFCPPPPICPPPPPPPMPCPPPPPP 87
>AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical
protein E02D9.1b protein.
Length = 315
Score = 29.1 bits (62), Expect = 6.8
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 1032 GGWXXGRGXF-GXXGXLWXRGGXXXVXGVGVGG 937
GG+ GRG F G G + RGG + G G GG
Sbjct: 275 GGFRGGRGGFGGPGGPMGGRGGMGGMGGRGRGG 307
>AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical
protein E02D9.1c protein.
Length = 317
Score = 29.1 bits (62), Expect = 6.8
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 1032 GGWXXGRGXF-GXXGXLWXRGGXXXVXGVGVGG 937
GG+ GRG F G G + RGG + G G GG
Sbjct: 275 GGFRGGRGGFGGPGGPMGGRGGMGGMGGRGRGG 307
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 6.8
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 973 PPXPQTXPXPKXPSPXXPSPYXXIPPSAHXXPP 1071
PP + P P+ SP P P PP+ PP
Sbjct: 283 PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 315
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 6.8
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 973 PPXPQTXPXPKXPSPXXPSPYXXIPPSAHXXPP 1071
PP + P P+ SP P P PP+ PP
Sbjct: 304 PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 336
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 6.8
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 973 PPXPQTXPXPKXPSPXXPSPYXXIPPSAHXXPP 1071
PP + P P+ SP P P PP+ PP
Sbjct: 289 PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 321
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical protein
Y49E10.10 protein.
Length = 425
Score = 28.7 bits (61), Expect = 8.9
Identities = 18/54 (33%), Positives = 19/54 (35%)
Frame = +2
Query: 929 PXXPPTPTPXTXXXPPLLHKXPXXPXXPLPXXHPPTHXSLHPRTXTLPXTKVTP 1090
P P P T PP K P P P PPT + P T T V P
Sbjct: 170 PTTEAPPPPTTKAPPPPTTKAPPPPTTKAPP--PPTTKAPPPPTTNKEVTTVAP 221
>U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical protein
C27H5.3 protein.
Length = 448
Score = 28.7 bits (61), Expect = 8.9
Identities = 19/60 (31%), Positives = 24/60 (40%)
Frame = -1
Query: 1002 GXXGXLWXRGGXXXVXGVGVGGXXGWXGDXXGXXRKGGRXCEXXEXGXXRAGGX*XSEQG 823
G G RGG G +GG G+ GD G GGR + G GG ++G
Sbjct: 293 GERGGRGGRGGFGGGRGGPMGGRGGFGGDRGGYGGGGGRG--GFDGGRGGGGGFRGGDRG 350
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 28.7 bits (61), Expect = 8.9
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +3
Query: 609 PXPXXPLHXPXPIPPTXPXPXPXXP 683
P P P+ P +PP P P P P
Sbjct: 499 PPPLPPIATPSSVPPPPPPPPPPPP 523
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 28.7 bits (61), Expect = 8.9
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +1
Query: 973 PPXPQTXPXPKXPSPXXPSPYXXIPP-SAHXXPP 1071
PP P T P+ P P P P I P +AH PP
Sbjct: 203 PPVPLTSNIPQAP-PAPPPPIGGIAPVNAHGAPP 235
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 28.7 bits (61), Expect = 8.9
Identities = 17/57 (29%), Positives = 20/57 (35%)
Frame = +2
Query: 920 PXHPXXPPTPTPXTXXXPPLLHKXPXXPXXPLPXXHPPTHXSLHPRTXTLPXTKVTP 1090
P P PP P T PP+ P P P P H + P T V+P
Sbjct: 86 PAKPTPPPPPPKPTIRPPPIPASPPPRPPASEPVGIPLYSEKQHQQQLR-PTTAVSP 141
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 28.7 bits (61), Expect = 8.9
Identities = 17/57 (29%), Positives = 20/57 (35%)
Frame = +2
Query: 920 PXHPXXPPTPTPXTXXXPPLLHKXPXXPXXPLPXXHPPTHXSLHPRTXTLPXTKVTP 1090
P P PP P T PP+ P P P P H + P T V+P
Sbjct: 308 PAKPTPPPPPPKPTIRPPPIPASPPPRPPASEPVGIPLYSEKQHQQQLR-PTTAVSP 363
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 28.7 bits (61), Expect = 8.9
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +1
Query: 973 PPXPQTXPXPKXPSPXXPSPYXXIPP-SAHXXPP 1071
PP P T P+ P P P P I P +AH PP
Sbjct: 189 PPVPLTSNIPQAP-PAPPPPIGGIAPVNAHGAPP 221
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 28.7 bits (61), Expect = 8.9
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +1
Query: 973 PPXPQTXPXPKXPSPXXPSPYXXIPP-SAHXXPP 1071
PP P T P+ P P P P I P +AH PP
Sbjct: 189 PPVPLTSNIPQAP-PAPPPPIGGIAPVNAHGAPP 221
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,616,035
Number of Sequences: 27780
Number of extensions: 180527
Number of successful extensions: 1585
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3412067766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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