Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_N21
(950 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275... 31 1.0
02_05_0002 - 24849189-24849825,24850267-24850328 29 4.1
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847... 29 5.4
03_05_0161 + 21400580-21401695 29 5.4
02_04_0382 - 22501041-22501279,22501717-22501810 29 5.4
07_03_1140 - 24258627-24258849,24259967-24260089,24260200-242609... 28 9.5
06_03_1274 + 28897491-28897707,28897804-28897935,28898029-288980... 28 9.5
01_03_0005 + 11568545-11569119,11569179-11569191 28 9.5
01_01_0083 + 631196-631675 28 9.5
>07_03_1691 -
28726307-28726323,28726588-28726953,28727483-28727567,
28728255-28728387,28729793-28730328
Length = 378
Score = 31.5 bits (68), Expect = 1.0
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +2
Query: 680 GGGGGXXXXPPPPPP 724
GGGGG PPPPPP
Sbjct: 35 GGGGGAGPTPPPPPP 49
Score = 31.1 bits (67), Expect = 1.3
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -3
Query: 723 GGGGGGXXXXPPPPP 679
GGGGGG PPPPP
Sbjct: 34 GGGGGGAGPTPPPPP 48
Score = 29.1 bits (62), Expect = 5.4
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 680 GGGGGXXXXPPPPPP 724
GGGG PPPPPP
Sbjct: 36 GGGGAGPTPPPPPPP 50
Score = 29.1 bits (62), Expect = 5.4
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 680 GGGGGXXXXPPPPPP 724
GGG G PPPPPP
Sbjct: 37 GGGAGPTPPPPPPPP 51
Score = 28.7 bits (61), Expect = 7.2
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 723 GGGGGGXXXXPPPPP 679
GGGGG PPPPP
Sbjct: 35 GGGGGAGPTPPPPPP 49
Score = 28.7 bits (61), Expect = 7.2
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 723 GGGGGGXXXXPPPPP 679
GGGG G PPPPP
Sbjct: 36 GGGGAGPTPPPPPPP 50
Score = 28.3 bits (60), Expect = 9.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 680 GGGGGXXXXPPPPPP 724
GGGGG PPPPP
Sbjct: 34 GGGGGGAGPTPPPPP 48
Score = 28.3 bits (60), Expect = 9.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 682 GGGGGXXXXXPPPPP 726
GGGGG PPPPP
Sbjct: 34 GGGGGGAGPTPPPPP 48
Score = 28.3 bits (60), Expect = 9.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 682 GGGGGXXXXXPPPPP 726
GGGGG PPPPP
Sbjct: 35 GGGGGAGPTPPPPPP 49
>02_05_0002 - 24849189-24849825,24850267-24850328
Length = 232
Score = 29.5 bits (63), Expect = 4.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2
Query: 680 GGGGGXXXXPPPPPPXS 730
GGGG PPPPPP S
Sbjct: 211 GGGGHPHPPPPPPPPPS 227
>04_03_0977 +
21381857-21383757,21384299-21384458,21384669-21384717,
21385117-21385169
Length = 720
Score = 29.1 bits (62), Expect = 5.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 683 GGGGXXXXPPPPPP 724
GGGG PPPPPP
Sbjct: 93 GGGGWVQLPPPPPP 106
Score = 28.3 bits (60), Expect = 9.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 680 GGGGGXXXXPPPPPP 724
GGGG PPPPPP
Sbjct: 93 GGGGWVQLPPPPPPP 107
>03_05_0161 + 21400580-21401695
Length = 371
Score = 29.1 bits (62), Expect = 5.4
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 680 GGGGGXXXXPPPPPP 724
G GGG PPPPPP
Sbjct: 15 GAGGGGTTTPPPPPP 29
Score = 28.7 bits (61), Expect = 7.2
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 723 GGGGGGXXXXPPPPP 679
G GGGG PPPPP
Sbjct: 15 GAGGGGTTTPPPPPP 29
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 29.1 bits (62), Expect = 5.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 683 GGGGXXXXPPPPPP 724
GGGG PPPPPP
Sbjct: 90 GGGGGYGKPPPPPP 103
Score = 28.7 bits (61), Expect = 7.2
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -3
Query: 720 GGGGGXXXXPPPPP 679
GGGGG PPPPP
Sbjct: 90 GGGGGYGKPPPPPP 103
Score = 28.7 bits (61), Expect = 7.2
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 680 GGGGGXXXXPPPPP 721
GGGGG PPPPP
Sbjct: 90 GGGGGYGKPPPPPP 103
>07_03_1140 -
24258627-24258849,24259967-24260089,24260200-24260921,
24260945-24261073,24261484-24261714
Length = 475
Score = 28.3 bits (60), Expect = 9.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 680 GGGGGXXXXPPPPPP 724
GGGGG PP PPP
Sbjct: 9 GGGGGSLWGPPQPPP 23
Score = 28.3 bits (60), Expect = 9.5
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +2
Query: 680 GGGGGXXXXPPPPPPXS 730
GGGGG PPPPPP S
Sbjct: 53 GGGGGGW--PPPPPPLS 67
>06_03_1274 +
28897491-28897707,28897804-28897935,28898029-28898096,
28898216-28898280,28898468-28898534,28898630-28898917,
28898995-28899102,28899236-28899487,28899918-28899997,
28900092-28900185,28900728-28900810,28901319-28901873,
28902085-28902616
Length = 846
Score = 28.3 bits (60), Expect = 9.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -3
Query: 723 GGGGGGXXXXPPPP 682
GGGGGG PPPP
Sbjct: 34 GGGGGGGGAVPPPP 47
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 28.3 bits (60), Expect = 9.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -3
Query: 723 GGGGGGXXXXPPPP 682
GGGGGG PPPP
Sbjct: 130 GGGGGGAYPTPPPP 143
>01_01_0083 + 631196-631675
Length = 159
Score = 28.3 bits (60), Expect = 9.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 680 GGGGGXXXXPPPPPP 724
GGGGG P PPPP
Sbjct: 98 GGGGGGFNYPAPPPP 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,691,440
Number of Sequences: 37544
Number of extensions: 377299
Number of successful extensions: 7227
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5873
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2741249160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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