Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_N20
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.031
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.5  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    26   8.2  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   8.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.031
 Identities = 15/31 (48%), Positives = 15/31 (48%)
 Frame = +1

Query: 475 PPPPXXXGXRXXXPPPPPPXXXXPPXGGGGG 567
           PPPP   G     PPPPPP    PP    GG
Sbjct: 762 PPPPPPPGVAGAGPPPPPP---PPPAVSAGG 789



 Score = 29.1 bits (62), Expect = 0.88
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 462 PKKKXPPPXGXGGXXXGPPPPPP 530
           P    PPP   G     PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +3

Query: 477 PPPXGXGGXXXGPPPPPPXXXPPPRXGXGG 566
           PPP        G  PPPP   PPP    GG
Sbjct: 761 PPPPPPPPGVAGAGPPPP-PPPPPAVSAGG 789



 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +2

Query: 479 PPPGXXGXXXGXPPPPPXXXXXPPXGXGGGG 571
           PPP       G PPPPP     PP G  G G
Sbjct: 752 PPPAPI---MGGPPPPP-----PPPGVAGAG 774


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 475 PPPPXXXGXRXXXPPPPPP 531
           PPPP   G      PPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPP 28



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 475 PPPPXXXGXRXXXPPPPPP 531
           PPPP         PPPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 475 PPPPXXXGXRXXXPPPPPP 531
           PPPP         PPPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29



 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 462 PKKKXPPPXGXGGXXXGPPPPPP 530
           P    PPP   G      PPPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPP 28


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +3

Query: 465 KKKXPPPXGXGGXXXGPPPPPPXXXPPPRXGXGG 566
           + +  PP G G      PPPP    PPPR    G
Sbjct: 320 RNRGKPPIGNGSSNSSLPPPP----PPPRSNAAG 349


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = -1

Query: 547 GGGXXXGGGGGGPXXXPPXPXGGGXF 470
           GGG   GG GGG    PP P G G F
Sbjct: 187 GGGF--GGFGGGSGGPPPGPGGFGGF 210



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -2

Query: 549 GGXXXXXGGGGGXPXXXPXXPGGGGXF 469
           GG     GGG G P   P   GG G F
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGF 213


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
 Frame = +3

Query: 477 PPPXGXGGXXXGPP-PPPPXXXPPPR 551
           PP         GPP PPPP    PPR
Sbjct: 214 PPKFRHKKVPRGPPSPPPPVLHSPPR 239


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +1

Query: 475  PPPPXXXGXRXXXPPPPPPXXXXPPXGGGGG 567
            PPPP         PP   P    PP G   G
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPPAG 1912


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.150    0.539 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,396,266
Number of Sequences: 5004
Number of extensions: 20815
Number of successful extensions: 252
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)