Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_N18
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...   124   1e-29
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    26   6.5  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score =  124 bits (300), Expect = 1e-29
 Identities = 64/150 (42%), Positives = 86/150 (57%), Gaps = 2/150 (1%)
 Frame = +2

Query: 257 HTILVNKGLR*GXXXXXXXXXXXXXXXXXXXXHRRLSPNIEIGRI*PPSRITP--FNPFQ 430
           HT  V KGL+ G                    H  LSP  E+G + PP  I     +P +
Sbjct: 81  HTKAVTKGLKIGFMLFLISETFLFASIFWAFFHSSLSPTFELGAVWPPVGIADKTIDPLE 140

Query: 431 IPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRLFLTILLGFYXTILQAYEYIEASFTI 610
           +PLLNT+IL+ SG ++T AH+SLI  N     + L++TI L F     QAYEY  A FTI
Sbjct: 141 VPLLNTVILLTSGASLTYAHYSLIARNRENALKGLYMTIALSFLFLGGQAYEYWNAPFTI 200

Query: 611 ADRIYGSTFFIATGFHGIHVIIGTLFLLFA 700
           +D +YG++F+ ATG HGIH+I+GT+ LL A
Sbjct: 201 SDSVYGASFYFATGLHGIHIIVGTILLLVA 230


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 1   TFPYXLTIGNP*DLLKINNNHPFHL 75
           TF Y +   +P +LL +  +HPFH+
Sbjct: 270 TFEYYVQTYDPNNLLMLLRSHPFHI 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,228,822
Number of Sequences: 5004
Number of extensions: 34897
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)