Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_N16
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP subunit|Schizo...    26   5.4  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    25   9.5  

>SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 105 VCIHSNYLFFHQRERVTKKKKILRIPYSESV 13
           +CIH +    H    +TK+ +++R+P  +SV
Sbjct: 149 ICIHESK---HMLSLITKENRVVRVPKQDSV 176


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/43 (34%), Positives = 16/43 (37%)
 Frame = -1

Query: 559 PPPPXGGXXXXXGGGGFFKXXXGGPKXXGXXXX*KXPGGENFF 431
           PPPP        G GGF     GG +          PGG  FF
Sbjct: 76  PPPPGAEGGPGAGFGGFPGAGPGGARTFHFNMG--GPGGAQFF 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,996
Number of Sequences: 5004
Number of extensions: 25707
Number of successful extensions: 35
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)