Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_N16
(802 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 29 3.9
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 28 6.8
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 28 6.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 8.9
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 8.9
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 8.9
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 8.9
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 8.9
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 8.9
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +3
Query: 519 PPXKXXXPPXGGGGXXXXGGXXXXXXXXXXXXPPPP 626
PP P GGGG GG PPPP
Sbjct: 181 PPSNDFGPGGGGGGMGGGGGSGGSGGGSGRFPPPPP 216
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = -2
Query: 627 GGGGAXFXGXXXXXXXPPXXXXXPPPXGXGXXXXXGGGGFLXXXGG 490
GGGG G PP PPP G GGGG GG
Sbjct: 38 GGGGCGGGGGCGGGCAPP-----PPPPACGGGCGGGGGGCGGGGGG 78
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = -1
Query: 625 GGGGXXXXXXXXXXXXPPXXXXPPPPXGGXXXXXGGGGFFKXXXGG 488
GGGG PP PPPP G GGGG GG
Sbjct: 95 GGGGCGGGGGCGGGCAPP----PPPPACGGGCGGGGGGCGGGCGGG 136
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/64 (29%), Positives = 22/64 (34%)
Frame = +1
Query: 514 PPPXXXXXXXPXGGGGXXXXGGXXXXGXXPXEXGPPPPXXKKXKKXXXXFXXKXXPXXFP 693
PPP P GGGG G G P PPPP + + + P P
Sbjct: 70 PPPFDGGYNRPYGGGGGGGYG--RPQGYVPP---PPPPPTQPEPEPEPRPEPQPEPQPEP 124
Query: 694 XPPP 705
P P
Sbjct: 125 QPEP 128
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/75 (24%), Positives = 19/75 (25%)
Frame = +1
Query: 487 GPPXXX*KTPPPXXXXXXXPXGGGGXXXXGGXXXXGXXPXEXGPPPPXXKKXKKXXXXFX 666
GPP PPP P GG P PP
Sbjct: 342 GPPQGSFGAPPPQQFHAPSPQSFGGPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQ 401
Query: 667 XKXXPXXFPXPPPGG 711
P + PPPGG
Sbjct: 402 GPGGPGGYGPPPPGG 416
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/75 (29%), Positives = 22/75 (29%)
Frame = +1
Query: 514 PPPXXXXXXXPXGGGGXXXXGGXXXXGXXPXEXGPPPPXXKKXKKXXXXFXXKXXPXXFP 693
PPP P GG G P GPPPP P P
Sbjct: 727 PPPPPPGGLPPITGGPPPPP---PPGGLPPISGGPPPPPPPPG----------GCPPPPP 773
Query: 694 XPPPGGXXXXXGXPP 738
PPPGG PP
Sbjct: 774 PPPPGGFKGGPPPPP 788
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -3
Query: 623 GGGPXSXGXXPXXXXPPXXXXPPPPXGXXXXFXXG 519
GG P G P PP PPPP F G
Sbjct: 749 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/75 (29%), Positives = 22/75 (29%)
Frame = +1
Query: 514 PPPXXXXXXXPXGGGGXXXXGGXXXXGXXPXEXGPPPPXXKKXKKXXXXFXXKXXPXXFP 693
PPP P GG G P GPPPP P P
Sbjct: 727 PPPPPPGGLPPITGGPPPPP---PPGGLPPISGGPPPPPPPPG----------GCPPPPP 773
Query: 694 XPPPGGXXXXXGXPP 738
PPPGG PP
Sbjct: 774 PPPPGGFKGGPPPPP 788
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -3
Query: 623 GGGPXSXGXXPXXXXPPXXXXPPPPXGXXXXFXXG 519
GG P G P PP PPPP F G
Sbjct: 749 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/75 (29%), Positives = 22/75 (29%)
Frame = +1
Query: 514 PPPXXXXXXXPXGGGGXXXXGGXXXXGXXPXEXGPPPPXXKKXKKXXXXFXXKXXPXXFP 693
PPP P GG G P GPPPP P P
Sbjct: 310 PPPPPPGGLPPITGGPPPPP---PPGGLPPISGGPPPPPPPPG----------GCPPPPP 356
Query: 694 XPPPGGXXXXXGXPP 738
PPPGG PP
Sbjct: 357 PPPPGGFKGGPPPPP 371
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -3
Query: 623 GGGPXSXGXXPXXXXPPXXXXPPPPXGXXXXFXXG 519
GG P G P PP PPPP F G
Sbjct: 332 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 366
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/48 (31%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Frame = +3
Query: 489 PPXXXLKNPPPPX--KXXXPPXGGGGXXXXGGXXXXXXXXXXXXPPPP 626
PP +PPPP PP G GG PPPP
Sbjct: 256 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 303
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/50 (32%), Positives = 17/50 (34%)
Frame = +3
Query: 489 PPXXXLKNPPPPXKXXXPPXGGGGXXXXGGXXXXXXXXXXXXPPPPXXKK 638
PP PPPP PP G GG PPPP K+
Sbjct: 290 PPPRAGSPPPPPPPRGSPPTGSLPPPQAGG--SPPPAGTGSPPPPPRQKR 337
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/48 (31%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Frame = +3
Query: 489 PPXXXLKNPPPPX--KXXXPPXGGGGXXXXGGXXXXXXXXXXXXPPPP 626
PP +PPPP PP G GG PPPP
Sbjct: 277 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 324
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/50 (32%), Positives = 17/50 (34%)
Frame = +3
Query: 489 PPXXXLKNPPPPXKXXXPPXGGGGXXXXGGXXXXXXXXXXXXPPPPXXKK 638
PP PPPP PP G GG PPPP K+
Sbjct: 311 PPPRAGSPPPPPPPRGSPPTGSLPPPQAGG--SPPPAGTGSPPPPPRQKR 358
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/48 (31%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Frame = +3
Query: 489 PPXXXLKNPPPPX--KXXXPPXGGGGXXXXGGXXXXXXXXXXXXPPPP 626
PP +PPPP PP G GG PPPP
Sbjct: 262 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 309
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/50 (32%), Positives = 17/50 (34%)
Frame = +3
Query: 489 PPXXXLKNPPPPXKXXXPPXGGGGXXXXGGXXXXXXXXXXXXPPPPXXKK 638
PP PPPP PP G GG PPPP K+
Sbjct: 296 PPPRAGSPPPPPPPRGSPPTGSLPPPQAGG--SPPPAGTGSPPPPPRQKR 343
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,713,184
Number of Sequences: 27780
Number of extensions: 262108
Number of successful extensions: 932
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -