Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_N14
(890 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 35 0.100
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 31 0.93
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.1
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 29 3.8
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 29 5.0
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 29 6.6
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 28 8.7
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 34.7 bits (76), Expect = 0.100
Identities = 19/57 (33%), Positives = 20/57 (35%)
Frame = +2
Query: 293 GEKPXPPXXGEXXPPXXXXPPPXXXXXXKXXKKXXGGXGXPPTPPKXFXCVWXXPXP 463
G P PP G PP PPP GG PP PP+ V P P
Sbjct: 1147 GVPPPPPVGGLGGPPAP--PPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTP 1201
Score = 31.5 bits (68), Expect = 0.93
Identities = 22/78 (28%), Positives = 23/78 (29%)
Frame = +1
Query: 292 GGKTXPPXXGGXXPPXXXXPPXXXXXXXXXXKKXXGGXGXPPHXPQKXXXCXGXPXPXPX 471
GG PP GG P PP GG PP P+ G P P P
Sbjct: 1146 GGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAH-GGVAPPPPPPRGHGGVGGPPTP-PG 1203
Query: 472 XXXXXXFXXFXXXPPPSP 525
PPP P
Sbjct: 1204 APAPPMPPGVPGGPPPPP 1221
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 31.5 bits (68), Expect = 0.93
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = +2
Query: 287 TPGEKPXPPXXGEXXPPXXXXPPPXXXXXXKXXKKXXGGXGXPPTPP 427
+PGE PP PP PPP G PP PP
Sbjct: 13 SPGEAEWPPELRLPPPPPPHPPPPPPLEPAPPSTPQLRGEASPPPPP 59
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/68 (29%), Positives = 20/68 (29%)
Frame = +2
Query: 224 PPGXXPXGXPQXGXXGXXXXXTPGEKPXPPXXGEXXPPXXXXPPPXXXXXXKXXKKXXGG 403
PP P P G G P PP G PP PPP GG
Sbjct: 331 PPKAAPPPPPPKGPP--PPPPAKGPPPPPPPKGPSPPPP---PPPGGKKGGPPPPPPKGG 385
Query: 404 XGXPPTPP 427
PP P
Sbjct: 386 ASRPPAAP 393
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = +2
Query: 302 PXPPXXGEXXPPXXXXPPPXXXXXXKXXKKXXGGXGXPPTPP 427
P PP PP PPP G PP PP
Sbjct: 328 PPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPP 369
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/73 (27%), Positives = 21/73 (28%), Gaps = 5/73 (6%)
Frame = +2
Query: 227 PGXXPXGXPQXGXXGXXXXXTPGEKPXPPXXGEXXPP---XXXXPPPXXXXXXKXXKKXX 397
P P P+ P P PP PP PPP
Sbjct: 311 PAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPP 370
Query: 398 GG--XGXPPTPPK 430
GG G PP PPK
Sbjct: 371 GGKKGGPPPPPPK 383
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 290 PGEKPXPPXXGEXXPPXXXXPPP 358
P P PP GE PP PPP
Sbjct: 78 PAAPPPPPAEGEAAPPPADAPPP 100
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 290 PGEKPXPPXXGEXXPPXXXXPPP 358
PG++P PP + PP PPP
Sbjct: 136 PGQEPPPPHVPKAAPPPPPPPPP 158
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/44 (29%), Positives = 14/44 (31%)
Frame = +2
Query: 296 EKPXPPXXGEXXPPXXXXPPPXXXXXXKXXKKXXGGXGXPPTPP 427
+ P PP PP PPP G G P PP
Sbjct: 573 QAPMPPLKASPVPPPEPSPPPAPKAAPPPPPPKSTGPGPPRPPP 616
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +2
Query: 290 PGEKPXPPXXGEXXPPXXXXPPPXXXXXXKXXKKXXGGXGXPPTPPK 430
P P PP PP PPP KK PP PPK
Sbjct: 349 PKLMPPPPPPPPPPPPPPPPPPPRPPPPPPPIKK----GAPPPAPPK 391
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,924,746
Number of Sequences: 37544
Number of extensions: 203501
Number of successful extensions: 466
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -