Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_N12
         (959 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0218 + 18219956-18220555                                         32   0.78 
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    30   3.1  
06_03_0335 + 19662933-19663334,19663358-19664023                       30   3.1  
01_07_0185 + 41854199-41855069,41855177-41855610                       30   3.1  
03_04_0061 - 16949038-16950006                                         29   4.2  
11_06_0012 + 19251085-19251666                                         29   7.3  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.6  
05_04_0142 - 18372751-18373338                                         28   9.6  

>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 31.9 bits (69), Expect = 0.78
 Identities = 22/69 (31%), Positives = 28/69 (40%)
 Frame = -1

Query: 824 PIRAPSADGVRAHSPAGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEG 645
           P+ +P   G+       A    +T  P     R R   R E  G  + KR+GR R    G
Sbjct: 75  PVLSPRNGGLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGSSG 130

Query: 644 ACRGKRLVS 618
             RGKR  S
Sbjct: 131 GLRGKRRAS 139


>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 16/53 (30%), Positives = 20/53 (37%)
 Frame = +1

Query: 526 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLQAPSCALLFRPCRLP 684
           CWR  +        T  D Q    +    +KD    P   PSC L+F P   P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335


>06_03_0335 + 19662933-19663334,19663358-19664023
          Length = 355

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = -1

Query: 794 RAHSPAGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGACRG 633
           R H P  A  LH   +P A   R+R A RR   G+V+        R   GA  G
Sbjct: 140 RLHRPLAARPLHVPGVPRAPGARRRAAQRRR--GRVAAAAAAAPVRPVAGAAHG 191


>01_07_0185 + 41854199-41855069,41855177-41855610
          Length = 434

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -1

Query: 809 SADGVRA-HSPAGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGACRG 633
           S DG+ A H+  GA  + RT +P    MR   +S    GG+ +    G   R   GA RG
Sbjct: 18  SNDGLPADHARGGA--IVRTALPNY--MRATSSSDARGGGREAAAATGAPPRRERGAARG 73

Query: 632 KRLV 621
           K +V
Sbjct: 74  KAMV 77


>03_04_0061 - 16949038-16950006
          Length = 322

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 608 RTIKIPGVSPCKLPRALSCSDPAAYRIPVRLSPFGKRGA 724
           RT+K PG+   ++PRA+  + P  Y   VR +   +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293


>11_06_0012 + 19251085-19251666
          Length = 193

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 728 RKRHASRREKGGQVSGKRQGRNRRAHEGACRGKRLVS 618
           R+RH  RR+ GG   G R  R      G+C G  +V+
Sbjct: 83  RRRHGGRRDSGGGAGG-RGSRGGVGDLGSCGGTAIVA 118


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 306 NESAN---ARGEAVCVLGALPLPRSLTRCAR 389
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>05_04_0142 - 18372751-18373338
          Length = 195

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 722 RHASRREKGGQVSGKRQGRNRRAHEGACRGKRLVSL*SC 606
           R     E+GG   G++QGR R+A   A R +RL +  +C
Sbjct: 59  RRVEEEEQGGGGGGRKQGRRRKAVARAIR-ERLPAAVAC 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,090,708
Number of Sequences: 37544
Number of extensions: 530213
Number of successful extensions: 1632
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1632
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2776393380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)