Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_N10
         (867 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59...    30   2.8  
12_01_0482 - 3791630-3791698,3791983-3792124,3792202-3792344,379...    29   3.6  
08_02_1427 - 27020819-27020918,27021017-27021081,27021160-270212...    29   3.6  
06_01_1173 + 10014391-10014678,10015478-10017245,10017333-100174...    29   3.6  
02_01_0262 - 1734447-1735090,1735219-1735367,1735458-1735633,173...    28   8.4  

>04_01_0058 +
           592846-593185,594641-595182,596298-596987,597078-597233,
           597277-597856,598601-598764,598907-599100,599702-599750,
           599777-599806
          Length = 914

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 448 TDGDKDRQQNIVYFLTGQGIDPDNPLPPAMNG 353
           +DG+ D Q  ++ FL+  G+   +P PPA+ G
Sbjct: 173 SDGEMDAQLKVLEFLSHWGLINFHPFPPAVQG 204


>12_01_0482 -
           3791630-3791698,3791983-3792124,3792202-3792344,
           3792833-3792958,3794307-3794444,3794540-3794622,
           3794738-3794825,3796147-3796344
          Length = 328

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 467 DIVGNCNXXXXX*AAKHCLFPDWPRH 390
           D++  CN      + +H  +PDWP H
Sbjct: 204 DVMVQCNESSRVHSVRHIEYPDWPDH 229


>08_02_1427 -
           27020819-27020918,27021017-27021081,27021160-27021246,
           27021398-27021466,27022168-27022219,27022443-27022525,
           27022677-27022753,27022880-27023074,27023204-27023261,
           27023862-27023956,27024605-27024758
          Length = 344

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 637 FTKLGLCVSGLIIESYHSDEVFGYRCRRPQGLEGDLFI 750
           F  +G+CV+GLI+  + SD     R + P  L+GDL +
Sbjct: 143 FIGVGVCVAGLILVVF-SDVHASDRAKGPNPLKGDLLV 179


>06_01_1173 +
           10014391-10014678,10015478-10017245,10017333-10017436,
           10017632-10017706,10017887-10017918,10019396-10019482,
           10020848-10021294,10021477-10021630,10022203-10022329,
           10022547-10022632,10022719-10022790,10023083-10023286,
           10023732-10024049
          Length = 1253

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 404 DWPRHRPRQSFAAGYEWNAVGSSNNGPQSRPQLS 303
           DW  H P    AA + W   G +NNG  S P +S
Sbjct: 892 DWDHHPPPAKRAAAF-WAWRGGANNGSHSPPPVS 924


>02_01_0262 -
           1734447-1735090,1735219-1735367,1735458-1735633,
           1735719-1735853,1737039-1737120,1737307-1737461
          Length = 446

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 390 STQTILCRRL*MERSGVKQQWPAISTAIV 304
           +T T+LC R  + +S  K +W  ++T  V
Sbjct: 58  ATATLLCHRFYLRQSHAKNEWQTVATVCV 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,950,133
Number of Sequences: 37544
Number of extensions: 491797
Number of successful extensions: 1248
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)