Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_N10
(867 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr... 32 0.61
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr... 32 0.61
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ... 32 0.61
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei... 32 0.61
Z70270-6|CAA94226.2| 323|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z81541-2|CAB04412.2| 152|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel... 29 5.7
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell... 29 5.7
U88315-5|ABO16438.1| 355|Caenorhabditis elegans Hypothetical pr... 28 7.5
AL032624-2|CAA21520.2| 447|Caenorhabditis elegans Hypothetical ... 28 9.9
AF016688-9|AAN65322.1| 816|Caenorhabditis elegans Hypothetical ... 28 9.9
AF016688-8|AAB66079.2| 848|Caenorhabditis elegans Hypothetical ... 28 9.9
AC006720-3|AAF60447.1| 159|Caenorhabditis elegans Hypothetical ... 28 9.9
>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 31.9 bits (69), Expect = 0.61
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = -3
Query: 523 QQEEAVAGTIQILMNRSLVIL*VTATDGDKDRQQN-IVYFLTGQGIDPDNPLPPAMNGTQ 347
+Q++ I+ ++ V+ V ATD D+D + + IVY L GQG D + G
Sbjct: 1437 EQQKYATTVIEEDVDIPKVLFNVHATDADQDEKSSRIVYRLEGQGADEVFRI-----GKY 1491
Query: 346 WGQATMARNLDRNCPSNSPCIN 281
G + + LDR+ P+ P N
Sbjct: 1492 SGTIELVKALDRDPPAGVPSWN 1513
>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 31.9 bits (69), Expect = 0.61
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = -3
Query: 523 QQEEAVAGTIQILMNRSLVIL*VTATDGDKDRQQN-IVYFLTGQGIDPDNPLPPAMNGTQ 347
+Q++ I+ ++ V+ V ATD D+D + + IVY L GQG D + G
Sbjct: 1437 EQQKYATTVIEEDVDIPKVLFNVHATDADQDEKSSRIVYRLEGQGADEVFRI-----GKY 1491
Query: 346 WGQATMARNLDRNCPSNSPCIN 281
G + + LDR+ P+ P N
Sbjct: 1492 SGTIELVKALDRDPPAGVPSWN 1513
>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 31.9 bits (69), Expect = 0.61
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = -3
Query: 523 QQEEAVAGTIQILMNRSLVIL*VTATDGDKDRQQN-IVYFLTGQGIDPDNPLPPAMNGTQ 347
+Q++ I+ ++ V+ V ATD D+D + + IVY L GQG D + G
Sbjct: 1437 EQQKYATTVIEEDVDIPKVLFNVHATDADQDEKSSRIVYRLEGQGADEVFRI-----GKY 1491
Query: 346 WGQATMARNLDRNCPSNSPCIN 281
G + + LDR+ P+ P N
Sbjct: 1492 SGTIELVKALDRDPPAGVPSWN 1513
>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
protein.
Length = 2920
Score = 31.9 bits (69), Expect = 0.61
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = -3
Query: 523 QQEEAVAGTIQILMNRSLVIL*VTATDGDKDRQQN-IVYFLTGQGIDPDNPLPPAMNGTQ 347
+Q++ I+ ++ V+ V ATD D+D + + IVY L GQG D + G
Sbjct: 1437 EQQKYATTVIEEDVDIPKVLFNVHATDADQDEKSSRIVYRLEGQGADEVFRI-----GKY 1491
Query: 346 WGQATMARNLDRNCPSNSPCIN 281
G + + LDR+ P+ P N
Sbjct: 1492 SGTIELVKALDRDPPAGVPSWN 1513
>Z70270-6|CAA94226.2| 323|Caenorhabditis elegans Hypothetical
protein C53D6.4 protein.
Length = 323
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 59 CLHIILATNIYHVHKTDLVFVPSVVNRFENLCG 157
CL + LAT IYHV + L+ P V+ F++ CG
Sbjct: 250 CLLVCLATFIYHVRERILLSAP-VLQWFQSKCG 281
>Z81541-2|CAB04412.2| 152|Caenorhabditis elegans Hypothetical
protein F48F5.2 protein.
Length = 152
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -3
Query: 469 VIL*VTATDGDKDRQQNIVYFLTGQGIDPDNPLPPAMNGTQWGQATMARNLDRNCPSNSP 290
++L + T QQ+ +F G+G P P P + T GQ T ++DR +N P
Sbjct: 11 ILLQINVTKSFTPVQQDANHF--GKGYSPGPPDIPDIKDTPPGQDTQDDSIDRGTSANQP 68
>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans
trithorax-related protein LIN-59 protein.
Length = 1312
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 385 PDNPLPPAMNGTQWGQATMARNLDR 311
P LP MN +WG +A N+DR
Sbjct: 260 PKESLPTGMNVEEWGSFLIASNMDR 284
>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
lineage protein 59 protein.
Length = 1312
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 385 PDNPLPPAMNGTQWGQATMARNLDR 311
P LP MN +WG +A N+DR
Sbjct: 260 PKESLPTGMNVEEWGSFLIASNMDR 284
>U88315-5|ABO16438.1| 355|Caenorhabditis elegans Hypothetical
protein C37H5.14 protein.
Length = 355
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 346 TAFHS*PAAKDCLGRCLGQSGNRQCFAAYLYRRRLQLPTISPESD 480
T F S AA +C+G+ G+RQ AA+L R + ++P D
Sbjct: 9 TQFGSALAASTSSHQCIGEKGDRQSAAAFLRRMSVSF-KLAPVGD 52
>AL032624-2|CAA21520.2| 447|Caenorhabditis elegans Hypothetical
protein Y49A10A.1 protein.
Length = 447
Score = 27.9 bits (59), Expect = 9.9
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +1
Query: 670 IIESYHSDEVFGYRCRRPQGLEGDLFIPVETQTDTENK*RST**KIXPQYCTVGILL 840
I+E + SD R ++ + G+ F+PVET D K RS YC G LL
Sbjct: 18 ILEHFGSDPTPVRRRQQLKYKNGECFVPVETIVDNYPKQRS-----FHHYCNAGPLL 69
>AF016688-9|AAN65322.1| 816|Caenorhabditis elegans Hypothetical
protein F18A12.8b protein.
Length = 816
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 394 GIDPDNPLPPAMNGTQWGQATMARNLDRNCPSNSPCIN 281
G DP + + N +Q T++ N D PS SPC N
Sbjct: 4 GNDPPDYVHLRSNESQMQLITISENSDIPTPSGSPCFN 41
>AF016688-8|AAB66079.2| 848|Caenorhabditis elegans Hypothetical
protein F18A12.8a protein.
Length = 848
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 394 GIDPDNPLPPAMNGTQWGQATMARNLDRNCPSNSPCIN 281
G DP + + N +Q T++ N D PS SPC N
Sbjct: 4 GNDPPDYVHLRSNESQMQLITISENSDIPTPSGSPCFN 41
>AC006720-3|AAF60447.1| 159|Caenorhabditis elegans Hypothetical
protein Y17G9B.6 protein.
Length = 159
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 839 SNIPTVQYCGXIFYYVLLHLFSVSVCVSTGINKSPSSPWGRL 714
SN P++ + Y LLH FS STG +K P S + L
Sbjct: 30 SNTPSLPFSAIFSLYWLLHPFS----ASTGFSKGPQSDYRTL 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,431,393
Number of Sequences: 27780
Number of extensions: 457051
Number of successful extensions: 1152
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -