Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_N10
         (867 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    27   0.17 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.17 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    26   0.52 

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 616 IYPILN*FTKLGLCVSG-LIIESYH-SDEVFGYRCR 717
           IYP L    K  L  +G L++ S   SD++ GYRCR
Sbjct: 175 IYPSLQGDGKFHLLPTGELLVHSLEFSDQIHGYRCR 210


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 616 IYPILN*FTKLGLCVSG-LIIESYH-SDEVFGYRCR 717
           IYP L    K  L  +G L++ S   SD++ GYRCR
Sbjct: 175 IYPSLQGDGKFHLLPTGELLVHSLEFSDQIHGYRCR 210


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 856 CLYXKEAIFLLYSTVVXFSIMCSFTCFLYLFVF 758
           CL+     F++YS++  F I C    FLY  +F
Sbjct: 336 CLFYNTD-FIIYSSLSSFYIPCIIMVFLYYNIF 367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,284
Number of Sequences: 438
Number of extensions: 5493
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)