Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_N07
         (955 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.08c |||conserved fungal protein|Schizosaccharomyces po...    31   0.32 
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    27   5.1  
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual          26   9.0  

>SPAC18B11.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 95

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +1

Query: 331 MNILGMVFSMCGLMMRLKWCAWTAVFCSSISFANSRVSDDTKQIVSSFMLSISAVVMSYL 510
           ++++     M  L +R K  AW A   +  +  N+  S  +     +FM  I+A+V +YL
Sbjct: 27  LSLVSTATCMAALFLRFKLIAWVAFILTFSNLLNANTSPSSSPTSMAFM-GIAALVSTYL 85


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 483 HFSSSNVISSKPCTNDTTLGSSYYMII*NKHIVSVNLQKIKESLL 617
           HFSSS V  S   + +TT GS  +  + NKH+ S + Q + +S L
Sbjct: 82  HFSSSPVEESSTVSPETTTGS--FTPLNNKHLKSQD-QPLSDSQL 123


>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 231

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +1

Query: 313 DLTTDYMNIL---GMVFSMCGLMMRLKWCAWTAVFCSSISFANSRVSDDTKQIVSSFMLS 483
           D+T + M  L   G  FS+  L  ++K+       CS I    S+V  + +Q +S    S
Sbjct: 133 DMTGEIMRFLVTNGSKFSVQQLTQQVKFLRGLHKNCSEIEHLPSKVKSELQQKLSVMENS 192

Query: 484 ISAV 495
           IS V
Sbjct: 193 ISKV 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,156,188
Number of Sequences: 5004
Number of extensions: 37627
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)