Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_N07
         (955 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0016 + 31042619-31042795,31043066-31043170                       50   3e-06
06_01_0873 - 6693397-6694038,6694231-6694370,6694713-6694930,669...    29   4.1  
09_04_0504 + 18180321-18181013                                         24   6.8  
05_05_0175 + 22966151-22967614                                         28   9.5  

>03_06_0016 + 31042619-31042795,31043066-31043170
          Length = 93

 Score = 50.0 bits (114), Expect = 3e-06
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +1

Query: 289 PPTSAPAEDLTTDYMNILGMVFSMCGLMMRLKWCAWTA-VFCSSISFANSRVSDDTKQIV 465
           PP  +P +DL  DY   L +VF + G+M+R K C+W A +FC+          +D KQ+ 
Sbjct: 31  PPKLSP-QDLPIDYAGFLAVVFGVLGVMLRYKVCSWIAIIFCAQSLVNMKNFENDLKQLS 89

Query: 466 SSFM 477
            +FM
Sbjct: 90  MAFM 93


>06_01_0873 -
           6693397-6694038,6694231-6694370,6694713-6694930,
           6695040-6695133,6695247-6695483,6696192-6696260,
           6696513-6696636
          Length = 507

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 298 SAPAEDLTTDYMNILGMVFSMCGLMMRLKWCAWTAVFCSSISFANSRVS 444
           SA     TT YM + G+V      +  L   AW +V  + +SF+ S ++
Sbjct: 189 SADCSVFTTSYMVVFGVVQVFFSQLQSLHEVAWLSVLAAVMSFSYSAIA 237


>09_04_0504 + 18180321-18181013
          Length = 230

 Score = 24.2 bits (50), Expect(2) = 6.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 262 TEKRRYKPPPPTSAPA 309
           +++RR  PPPP   PA
Sbjct: 125 SKRRRVSPPPPQPVPA 140



 Score = 23.0 bits (47), Expect(2) = 6.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 283 PPPPTSAPAEDL 318
           PPPPT+A A D+
Sbjct: 141 PPPPTTADAADV 152


>05_05_0175 + 22966151-22967614
          Length = 487

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +1

Query: 250 HVALTEKRRYKPPPPTSAPAEDLTTDYMNILGMVFSMCGLMMRLKWCAWTAVFCSSISFA 429
           HV+  +++  +PPPP    + D+  +  +   M    CG M+ L W     V C      
Sbjct: 285 HVSTLQRKESEPPPP-PRQSRDIDEETQSD-EMSPRSCGFMLFLPWSV-KPVLCGFARSR 341

Query: 430 NSRVSD 447
            SR +D
Sbjct: 342 TSRAAD 347


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,268,903
Number of Sequences: 37544
Number of extensions: 261960
Number of successful extensions: 1176
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2752963900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)