Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_N07
         (955 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28730-1|AAA68261.1|  113|Caenorhabditis elegans Hypothetical pr...   141   8e-34
Z99942-5|CAI79198.1|  178|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z99942-4|CAB17069.1|  541|Caenorhabditis elegans Hypothetical pr...    29   3.7  

>U28730-1|AAA68261.1|  113|Caenorhabditis elegans Hypothetical
           protein K10B2.4 protein.
          Length = 113

 Score =  141 bits (341), Expect = 8e-34
 Identities = 64/96 (66%), Positives = 77/96 (80%), Gaps = 4/96 (4%)
 Frame = +1

Query: 274 RYKPPPPTS----APAEDLTTDYMNILGMVFSMCGLMMRLKWCAWTAVFCSSISFANSRV 441
           RYKP   T+    A +ED   +YMN+LGM+FSMCGLM+R+KWC+W A+ CS ISFAN+R 
Sbjct: 15  RYKPLDSTANQQQAISEDPLPEYMNVLGMIFSMCGLMIRMKWCSWLALVCSCISFANTRT 74

Query: 442 SDDTKQIVSSFMLSISAVVMSYLQNPAPMTPPWAAL 549
           SDD KQIVSSFMLS+SAVVMSYLQNP+P+ PPW  L
Sbjct: 75  SDDAKQIVSSFMLSVSAVVMSYLQNPSPIIPPWVTL 110


>Z99942-5|CAI79198.1|  178|Caenorhabditis elegans Hypothetical
           protein H13N06.4b protein.
          Length = 178

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -3

Query: 587 NRNYMFILYYHVVRAAQGGVIGAGF*RYDITTAEMDNMKELTICLVSSETLEFAK 423
           N N+ +  Y ++  AA  GV+G    ++ + TA++D+ K+ T+     E L+  K
Sbjct: 32  NENHSYYKYAYIGGAATAGVLGF---KHFVKTAKLDHAKDETMSEKKLENLQIYK 83


>Z99942-4|CAB17069.1|  541|Caenorhabditis elegans Hypothetical
           protein H13N06.4a protein.
          Length = 541

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -3

Query: 587 NRNYMFILYYHVVRAAQGGVIGAGF*RYDITTAEMDNMKELTICLVSSETLEFAK 423
           N N+ +  Y ++  AA  GV+G    ++ + TA++D+ K+ T+     E L+  K
Sbjct: 32  NENHSYYKYAYIGGAATAGVLGF---KHFVKTAKLDHAKDETMSEKKLENLQIYK 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,226,543
Number of Sequences: 27780
Number of extensions: 223424
Number of successful extensions: 753
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2475644248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)