Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_N06
         (906 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P01112 Cluster: GTPase HRas precursor; n=264; root|Rep:...    40   0.066
UniRef50_P01120 Cluster: Ras-like protein 2 precursor; n=42; Euk...    38   0.47 
UniRef50_Q5K4U3 Cluster: LET-60 RAS, short isoform; n=4; Bilater...    35   3.3  
UniRef50_UPI00015A63B4 Cluster: UPI00015A63B4 related cluster; n...    34   5.7  
UniRef50_Q2QFA9 Cluster: Ras2-like protein; n=3; Fungi|Rep: Ras2...    34   5.7  
UniRef50_Q1E935 Cluster: Ras-like protein; n=12; Eurotiomycetida...    33   7.6  
UniRef50_Q01387 Cluster: Protein ras-2 precursor; n=10; Ascomyco...    33   7.6  

>UniRef50_P01112 Cluster: GTPase HRas precursor; n=264; root|Rep:
           GTPase HRas precursor - Homo sapiens (Human)
          Length = 189

 Score = 40.3 bits (90), Expect = 0.066
 Identities = 20/29 (68%), Positives = 20/29 (68%)
 Frame = +1

Query: 277 MTEYKLXXXXXXXXXKSALTIQLIQNHFV 363
           MTEYKL         KSALTIQLIQNHFV
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFV 29



 Score = 37.5 bits (83), Expect = 0.47
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +2

Query: 365 DEYDPTIXDSYRKQVVI 415
           DEYDPTI DSYRKQVVI
Sbjct: 30  DEYDPTIEDSYRKQVVI 46


>UniRef50_P01120 Cluster: Ras-like protein 2 precursor; n=42;
           Eukaryota|Rep: Ras-like protein 2 precursor -
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 322

 Score = 37.5 bits (83), Expect = 0.47
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +2

Query: 365 DEYDPTIXDSYRKQVVI 415
           DEYDPTI DSYRKQVVI
Sbjct: 37  DEYDPTIEDSYRKQVVI 53


>UniRef50_Q5K4U3 Cluster: LET-60 RAS, short isoform; n=4;
           Bilateria|Rep: LET-60 RAS, short isoform - Meloidogyne
           artiellia (British root-knot nematode)
          Length = 159

 Score = 34.7 bits (76), Expect = 3.3
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +2

Query: 365 DEYDPTIXDSYRKQVVI 415
           +EYDPTI DSYRKQV+I
Sbjct: 30  EEYDPTIEDSYRKQVLI 46



 Score = 34.3 bits (75), Expect = 4.3
 Identities = 17/29 (58%), Positives = 18/29 (62%)
 Frame = +1

Query: 277 MTEYKLXXXXXXXXXKSALTIQLIQNHFV 363
           MTEYKL         KSALTIQLIQ  F+
Sbjct: 1   MTEYKLVVVGDGGVGKSALTIQLIQGQFI 29


>UniRef50_UPI00015A63B4 Cluster: UPI00015A63B4 related cluster; n=3;
           Danio rerio|Rep: UPI00015A63B4 UniRef100 entry - Danio
           rerio
          Length = 451

 Score = 33.9 bits (74), Expect = 5.7
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +1

Query: 37  LXTFXSRTPVKGLXXPPHCV-----IYXHLNSNNTLISRFTVTSSVIKHRPRQ 180
           L  +  +T    L  PPH       IY H  S +TLI+R T TS++I+H P Q
Sbjct: 105 LHIYTHQTSTSKLITPPHLNSSHLHIYTHQTSTSTLITRQTFTSTLIRH-PHQ 156


>UniRef50_Q2QFA9 Cluster: Ras2-like protein; n=3; Fungi|Rep:
           Ras2-like protein - Glomus intraradices
          Length = 196

 Score = 33.9 bits (74), Expect = 5.7
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +2

Query: 359 SWDEYDPTIXDSYRKQVVI 415
           S + YDPTI DSYRKQVVI
Sbjct: 26  SSETYDPTIEDSYRKQVVI 44


>UniRef50_Q1E935 Cluster: Ras-like protein; n=12;
           Eurotiomycetidae|Rep: Ras-like protein - Coccidioides
           immitis
          Length = 249

 Score = 33.5 bits (73), Expect = 7.6
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +2

Query: 365 DEYDPTIXDSYRKQVVI 415
           + YDPTI DSYRKQVVI
Sbjct: 34  ETYDPTIEDSYRKQVVI 50


>UniRef50_Q01387 Cluster: Protein ras-2 precursor; n=10;
           Ascomycota|Rep: Protein ras-2 precursor - Neurospora
           crassa
          Length = 229

 Score = 33.5 bits (73), Expect = 7.6
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +2

Query: 365 DEYDPTIXDSYRKQVVI 415
           + YDPTI DSYRKQVVI
Sbjct: 35  ETYDPTIEDSYRKQVVI 51


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 509,050,736
Number of Sequences: 1657284
Number of extensions: 7510304
Number of successful extensions: 14090
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14089
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 82391630811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)