Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_N06
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch...    35   0.014
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    28   2.1  
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch...    26   6.4  

>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 18/32 (56%), Positives = 20/32 (62%)
 Frame = +1

Query: 268 SRKMTEYKLXXXXXXXXXKSALTIQLIQNHFV 363
           S  + EYKL         KSALTIQLIQ+HFV
Sbjct: 3   STYLREYKLVVVGDGGVGKSALTIQLIQSHFV 34



 Score = 31.5 bits (68), Expect = 0.17
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +2

Query: 365 DEYDPTIXDSYRKQVVI 415
           DEYDPTI DSYRK+  I
Sbjct: 35  DEYDPTIEDSYRKKCEI 51


>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 397 VRIXYRGIVFVPRSDSVSAV*SMRIYQRLPHPQPPICTRSSCE 269
           +R   +G +F  RSDS+ A+      +      PPI T S CE
Sbjct: 127 LRTAKQGEIFRLRSDSLKALRQFFSSKDFTETNPPIITSSDCE 169


>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 185

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +1

Query: 322 KSALTIQLIQNHFV 363
           KS+LT+Q ++NHFV
Sbjct: 19  KSSLTVQYVENHFV 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,329
Number of Sequences: 5004
Number of extensions: 32097
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)