Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_N06
         (906 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0375 + 2699179-2699264,2699697-2699786,2699913-2699991,270...    31   1.7  
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947...    28   8.9  

>06_01_0375 +
           2699179-2699264,2699697-2699786,2699913-2699991,
           2700816-2700893,2701290-2701338,2702183-2702232,
           2702704-2702853,2703437-2703517,2703593-2703609,
           2705804-2705893,2706033-2706111,2706234-2706311,
           2707554-2707687,2707858-2707936,2708108-2708188,
           2708263-2708400
          Length = 452

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -1

Query: 330 CGFTNASRTHNHQFVLGHLARYTKYFFTQCHGTRKQRPRITTLVLLTSAWLSR 172
           CG  +A    N  FV+  + R  + F T    T  Q  RI   +L  + W SR
Sbjct: 321 CGSLSALTVPNGAFVISTINRSIRAFATMIFSTGIQVSRIVNAILFHNMWSSR 373


>03_03_0246 + 15789635-15794227,15794314-15794555,15794630-15794771,
            15796089-15796272,15796349-15796696,15796753-15797450,
            15798208-15798900
          Length = 2299

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 22   PTRAFLXTFXSRTPVKGLXXPPHCVIYXH 108
            P   F   F S   + G+  PPH V+Y H
Sbjct: 1954 PPTGFAGPFISPGGIPGVQGPPHMVVYNH 1982


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,064,894
Number of Sequences: 37544
Number of extensions: 213229
Number of successful extensions: 385
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)