Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_N06
         (906 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M55535-1|AAA28103.1|  187|Caenorhabditis elegans ras protein pro...    42   8e-04
Z68302-3|CAA92630.1|  184|Caenorhabditis elegans Hypothetical pr...    40   0.002
Z54236-8|CAA90983.1|  188|Caenorhabditis elegans Hypothetical pr...    31   0.86 
Z81074-1|CAB03044.2|  492|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF083223-1|AAD03681.1|  492|Caenorhabditis elegans nuclear recep...    29   4.6  
AC024809-6|AAF59545.1|  213|Caenorhabditis elegans Ral (ras-rela...    29   4.6  
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q...    29   6.0  

>M55535-1|AAA28103.1|  187|Caenorhabditis elegans ras protein
           protein.
          Length = 187

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 21/31 (67%), Positives = 21/31 (67%)
 Frame = +1

Query: 271 RKMTEYKLXXXXXXXXXKSALTIQLIQNHFV 363
           R MTEYKL         KSALTIQLIQNHFV
Sbjct: 2   RVMTEYKLVVVGDGGVGKSALTIQLIQNHFV 32



 Score = 35.9 bits (79), Expect = 0.040
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +2

Query: 365 DEYDPTIXDSYRKQVVI 415
           +EYDPTI DSYRKQVVI
Sbjct: 33  EEYDPTIEDSYRKQVVI 49


>Z68302-3|CAA92630.1|  184|Caenorhabditis elegans Hypothetical
           protein ZK792.6 protein.
          Length = 184

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 20/29 (68%), Positives = 20/29 (68%)
 Frame = +1

Query: 277 MTEYKLXXXXXXXXXKSALTIQLIQNHFV 363
           MTEYKL         KSALTIQLIQNHFV
Sbjct: 1   MTEYKLVVVGDGGVGKSALTIQLIQNHFV 29



 Score = 35.9 bits (79), Expect = 0.040
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +2

Query: 365 DEYDPTIXDSYRKQVVI 415
           +EYDPTI DSYRKQVVI
Sbjct: 30  EEYDPTIEDSYRKQVVI 46


>Z54236-8|CAA90983.1|  188|Caenorhabditis elegans Hypothetical
           protein C27B7.8 protein.
          Length = 188

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 365 DEYDPTIXDSYRKQVVI 415
           ++YDPTI DSYRKQV +
Sbjct: 30  EKYDPTIEDSYRKQVEV 46


>Z81074-1|CAB03044.2|  492|Caenorhabditis elegans Hypothetical
           protein F32B6.1 protein.
          Length = 492

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 206 HLYYSHLHGCRGLCF 162
           H YYS+  GC G+CF
Sbjct: 327 HAYYSYKSGCNGICF 341


>AF083223-1|AAD03681.1|  492|Caenorhabditis elegans nuclear receptor
           NHR-4 protein.
          Length = 492

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 206 HLYYSHLHGCRGLCF 162
           H YYS+  GC G+CF
Sbjct: 327 HAYYSYKSGCNGICF 341


>AC024809-6|AAF59545.1|  213|Caenorhabditis elegans Ral (ras-related
           gtpase) homologprotein 1 protein.
          Length = 213

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +2

Query: 365 DEYDPTIXDSYRKQVVI 415
           +EY+PT  DSYRK+VV+
Sbjct: 44  EEYEPTKADSYRKKVVL 60


>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 85
            protein.
          Length = 2203

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 176  DSHADVSNTSVVILGRCFLVP*HCVKKYFVYLA 274
            DSHA V  ++V ++GR  L     V+KY+  +A
Sbjct: 1359 DSHAQVRESAVELIGRFVLYDEEYVRKYYSQIA 1391


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,890,930
Number of Sequences: 27780
Number of extensions: 193517
Number of successful extensions: 328
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)