Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_N05
(856 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 36 0.010
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.013
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.21
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 1.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 2.5
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 27 3.4
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 23 5.7
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 6.7
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.5 bits (78), Expect = 0.010
Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Frame = +2
Query: 587 PPXRGGGXXXFSPXXPPPPPPXKXXXXXXXXXXR-XXXPPPPPPXGGXXXXXPPPP 751
PP G P PPPPPP + PPPPPP PPP
Sbjct: 325 PPIGNGSSNSSLP--PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 32.7 bits (71), Expect = 0.068
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Frame = +2
Query: 632 PPPPPPXKXXXXXXXXXX----RXXXPPPPPPXGGXXXXXPPPPXG 757
PPPPPP + PPPPPP P PP G
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG 357
Score = 29.5 bits (63), Expect = 0.64
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +2
Query: 620 SPXXPPPPPPXKXXXXXXXXXXRXXXPPPPPP 715
S PP PPP + PPPPPP
Sbjct: 286 STSKPPLPPPSSRVSAAALAANKKRPPPPPPP 317
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/43 (30%), Positives = 14/43 (32%)
Frame = +2
Query: 635 PPPPPXKXXXXXXXXXXRXXXPPPPPPXGGXXXXXPPPPXGGA 763
PP PP PPPPPP PP G +
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSS 332
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.1 bits (77), Expect = 0.013
Identities = 19/53 (35%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Frame = +2
Query: 620 SPXXPPP----PPPXKXXXXXXXXXXRXXXPPPPPPXGGXXXXXPPPPXGGAP 766
SP PPP P P PPPPPP G PPPP P
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 32.3 bits (70), Expect = 0.090
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 684 VGXXXPXPPPPGGXGXGXXPPP 749
+G P PPPPG G G PPP
Sbjct: 758 MGGPPPPPPPPGVAGAGPPPPP 779
Score = 29.1 bits (62), Expect = 0.84
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 584 PPPXRGGGXXXFSPXXPPPPPP 649
PPP G P PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -1
Query: 745 GGXXPXPXPPGGGGXGXXXP 686
GG P P PPG G G P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPP 778
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.1 bits (67), Expect = 0.21
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 698 PPPPPPXGGXXXXXPPPP 751
PPPPPP G PPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPP 27
Score = 29.1 bits (62), Expect = 0.84
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +2
Query: 623 PXXPPPPPPXKXXXXXXXXXXRXXXPPPPPPXG 721
P PPPPPP PPPPPP G
Sbjct: 6 PGNPPPPPPPPGFEP-------PSQPPPPPPPG 31
Score = 29.1 bits (62), Expect = 0.84
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 698 PPPPPPXGGXXXXXPPPPXGG 760
PPPPPP PPPP G
Sbjct: 11 PPPPPPGFEPPSQPPPPPPPG 31
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 698 PPPPPPXGGXXXXXPPPP 751
PPPPPP G PPP
Sbjct: 9 PPPPPPPPGFEPPSQPPP 26
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 687 GXXXPXPPPPGGXGXGXXPPP 749
G P PPPPG PPP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPP 27
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -1
Query: 748 GGGXXPXPXPPGGGGXGXXXPTXXXXXXXXXFXGGGGGGXXG 623
GG P P P G GG G F GG GG G
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGG 236
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/48 (27%), Positives = 13/48 (27%)
Frame = +2
Query: 623 PXXPPPPPPXKXXXXXXXXXXRXXXPPPPPPXGGXXXXXPPPPXGGAP 766
P P PP P R PPP P PP P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLP 172
Score = 25.8 bits (54), Expect(2) = 1.7
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 698 PPPPPPXGGXXXXXPPPP 751
PPPPPP P PP
Sbjct: 5 PPPPPPAPAPAAAAPAPP 22
Score = 20.6 bits (41), Expect(2) = 1.7
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +2
Query: 620 SPXXPPPPP 646
+P PPPPP
Sbjct: 2 APAPPPPPP 10
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 24.6 bits (51), Expect(2) = 2.5
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +2
Query: 617 FSPXXPPPPPP 649
++P PPPPPP
Sbjct: 187 YNPPPPPPPPP 197
Score = 21.0 bits (42), Expect(2) = 2.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +2
Query: 698 PPPPPP 715
PPPPPP
Sbjct: 238 PPPPPP 243
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 687 GXXXPXPPPPGGXGXGXXPP 746
G PPPP G G G PP
Sbjct: 123 GVGYTAPPPPAGFGRGAPPP 142
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 23.0 bits (47), Expect(2) = 5.7
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 617 FSPXXPPPPP 646
+SP PPPPP
Sbjct: 368 YSPPPPPPPP 377
Score = 21.4 bits (43), Expect(2) = 5.7
Identities = 10/24 (41%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Frame = +2
Query: 698 PPPPPPXGGXXXXXPPP-PXGGAP 766
PPPPPP P P G P
Sbjct: 370 PPPPPPPPELLNHSPKSRPLGDKP 393
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.0 bits (47), Expect(2) = 6.7
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 623 PXXPPPPPP 649
P PPPPPP
Sbjct: 942 PAFPPPPPP 950
Score = 21.0 bits (42), Expect(2) = 6.7
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +2
Query: 698 PPPPPP 715
PPPPPP
Sbjct: 946 PPPPPP 951
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,672,694
Number of Sequences: 5004
Number of extensions: 23741
Number of successful extensions: 240
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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