Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_N04
         (875 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q59MZ6 Cluster: Potential mitochondrial membrane protei...    34   4.1  
UniRef50_UPI0000499CD1 Cluster: hypothetical protein 26.t00065; ...    33   9.5  

>UniRef50_Q59MZ6 Cluster: Potential mitochondrial membrane protein;
           n=5; Saccharomycetales|Rep: Potential mitochondrial
           membrane protein - Candida albicans (Yeast)
          Length = 561

 Score = 34.3 bits (75), Expect = 4.1
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
 Frame = +2

Query: 74  NEHRTENTRCIINIISNVFKFERFLKVPSVATYSLGAILRTYSPKV-----NLILLVRVL 238
           NE  + + +C+   +S  F F     V +++   +G+IL +Y PK+     +++L +  L
Sbjct: 68  NEFISNDAKCVEQDLSLNFLFTIACMVTNISALPVGSILDSYGPKITGIIGSILLTLGSL 127

Query: 239 SLNFILQSKRFSIFN 283
           SL F    ++  IF+
Sbjct: 128 SLKFASHIEKIQIFD 142


>UniRef50_UPI0000499CD1 Cluster: hypothetical protein 26.t00065;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 26.t00065 - Entamoeba histolytica HM-1:IMSS
          Length = 873

 Score = 33.1 bits (72), Expect = 9.5
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -3

Query: 360 TDRQIKLFKKHYTCIISPLCICTRHLLNIENRFDCKIKF 244
           T +++K  KK+YT +  P  IC + +LN  N  D  I+F
Sbjct: 51  TQKEMKYLKKYYTLLTIPNQICLKTILNRVNVNDISIEF 89


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 777,687,470
Number of Sequences: 1657284
Number of extensions: 15182755
Number of successful extensions: 32573
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32562
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 78292544701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)