Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_N04
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022980-4|AAG24191.1|  335|Caenorhabditis elegans Serpentine re...    37   0.022
U00046-4|AAC47043.2|  308|Caenorhabditis elegans Serpentine rece...    30   1.9  
U41542-8|AAN39682.1|  437|Caenorhabditis elegans Protein disulfi...    29   4.4  

>AF022980-4|AAG24191.1|  335|Caenorhabditis elegans Serpentine
           receptor, class j protein50 protein.
          Length = 335

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +1

Query: 640 SQFHKSAFGQFRVVLSVLLHSLIFGIWQRLIWWLDKRNEQILKPIW--ITDAYEQNTKLS 813
           S F K  FG + +  S L+  L FG+W  + + L + N +I + I     + Y  ++K  
Sbjct: 120 SNFTKKYFGWY-IAASFLIFGLFFGVWYAICYHLARVNIEIRQYIREDFRETYGTDSKNY 178

Query: 814 CDIRILFGNDANENRXKTWI 873
             I +LF   + E   ++WI
Sbjct: 179 NMIGVLFQEGSEETTFRSWI 198


>U00046-4|AAC47043.2|  308|Caenorhabditis elegans Serpentine
           receptor, class v protein1 protein.
          Length = 308

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +1

Query: 649 HKSAFGQFRVVLSVLLHSLIFGIWQRLIWWLDKRNEQILKPIWITDAYEQNTKLSCDIRI 828
           H  AFG   + ++    ++ + I  R  WW  K  + +L   WIT  +      S D + 
Sbjct: 99  HAQAFGIIFIAVNRFT-AVHYPIKHRQQWWTPKVTKTLLLIQWITPLFFMAPLFSTDFKF 157

Query: 829 LFGNDA 846
           LF +++
Sbjct: 158 LFSHNS 163


>U41542-8|AAN39682.1|  437|Caenorhabditis elegans Protein disulfide
           isomerase protein2, isoform b protein.
          Length = 437

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 727 LIWWLDKRNEQILKPIWITDAYEQNTKLSCDIRILFGNDANENRXKTWI 873
           +I WL K+   + KP+   DA ++  + +  + I +  D   +  KTWI
Sbjct: 121 IIAWLKKKTGPVAKPLADADAVKELQESADVVVIGYFKDTTSDDAKTWI 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,592,195
Number of Sequences: 27780
Number of extensions: 392957
Number of successful extensions: 982
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)