Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_N04
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    25   1.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   2.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   3.7  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 670 FRVVLSVLLHSLIFGIWQRLIWW 738
           F V+ +VLL  LIF    R  WW
Sbjct: 8   FEVIAAVLLTILIFVTSHRPAWW 30


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 211 EFDFIGPRFESKFYLTIKAVLNIQQVSGANTQRAYYTSVVLFKQL 345
           E +F+GP+  +  +    A  +   VSGA  +R  + +  LF  L
Sbjct: 110 EDEFMGPKCAAFLFQLSFATTSTTIVSGAMAERCNFKAYCLFSFL 154


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 539 VLYWTPYGIVN 571
           VL WTPYG+++
Sbjct: 284 VLSWTPYGVMS 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,751
Number of Sequences: 438
Number of extensions: 4841
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)