Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_N03
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.93 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.2  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    28   1.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.7  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   8.6  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 781 PPPPPXKKNXXXXPPXXXPPXPPP 852
           PPPPP        PP   PP PPP
Sbjct: 9   PPPPPPPPGFE--PPSQPPPPPPP 30



 Score = 23.8 bits (49), Expect(2) = 5.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 487 FXXPKXPPPPPXXG 446
           F  P  PPPPP  G
Sbjct: 18  FEPPSQPPPPPPPG 31



 Score = 20.6 bits (41), Expect(2) = 5.5
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -2

Query: 610 PPXGGXGXPPPPG 572
           PP      PPPPG
Sbjct: 5   PPGNPPPPPPPPG 17


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = -1

Query: 632 GGGGXPXPPXG--GXGXPPPPRXP 567
           GG   P PP G  G G PPPP  P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 781 PPPPPXKKNXXXXPPXXXPPXPPP 852
           PPPPP        PP   PP PPP
Sbjct: 762 PPPPPPPGVAGAGPPP--PPPPPP 783



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 781 PPPPPXKKNXXXXPPXXXPPXPP 849
           PPPPP         P   PP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
 Frame = +1

Query: 781 PPPPPXKKNXXXXPPXXXPPXPP------PXXPRPXXKXKKXGXXXPPP 909
           PPPPP         P   P  PP      P  P P       G   PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 25.0 bits (52), Expect(2) = 2.1
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 469 PPPPPXXGGKKXXGGGGXPPXP 404
           PPPPP   G     G G PP P
Sbjct: 761 PPPPPPPPG---VAGAGPPPPP 779



 Score = 21.0 bits (42), Expect(2) = 2.1
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = -2

Query: 286 GXPPPPXGGGXXXGGXXVFFXPPP 215
           G PPPP        G   ++ P P
Sbjct: 774 GPPPPPPPPPAVSAGGSRYYAPAP 797


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -1

Query: 866 GRGFXGGGXGGXXXGGNXXXFFFXGGGGG 780
           GRG  GGG GG   GG        GG GG
Sbjct: 24  GRGGFGGGRGGARGGGRGGARGGRGGRGG 52


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +1

Query: 775  IXPPPPPXKKNXXXXPPXXXPPXPPPXXPRP 867
            + P PPP +      P    PP PPP    P
Sbjct: 1188 VPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/44 (31%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
 Frame = +1

Query: 781  PPPPPXKKNXXXXP-PXXXPPXPPPXXPRPXXKXKKXGXXXPPP 909
            PP P    +    P P   PP P P    P  K        PPP
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPP 1065



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/48 (29%), Positives = 14/48 (29%)
 Frame = +1

Query: 775  IXPPPPPXKKNXXXXPPXXXPPXPPPXXPRPXXKXKKXGXXXPPPXEG 918
            I P P P        PP   PP P P    P           P P  G
Sbjct: 1178 IPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAG 1225


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/45 (31%), Positives = 17/45 (37%)
 Frame = +1

Query: 775 IXPPPPPXKKNXXXXPPXXXPPXPPPXXPRPXXKXKKXGXXXPPP 909
           + PPPPP + N     P   PP      P P  +        PPP
Sbjct: 336 LPPPPPPPRSNAAGSIP--LPPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/52 (30%), Positives = 17/52 (32%), Gaps = 9/52 (17%)
 Frame = +1

Query: 781 PPPPPXKKNXXXXPP-------XXXPPXPPPXXPRPXXK--XKKXGXXXPPP 909
           PPPPP  +     PP          PP PPP              G   PPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 626 GGXPXPPXGGXGXPPPP 576
           G  P PP G    PPPP
Sbjct: 349 GSIPLPPQGRSAPPPPP 365


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
 Frame = +1

Query: 781  PPPPPXKKNXXXXPPXXXPPXP--PPXXPRP 867
            PPPPP        PP   PP P  PP  P P
Sbjct: 1707 PPPPPMS----VPPPPSAPPMPAGPPSAPPP 1733


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/43 (30%), Positives = 14/43 (32%)
 Frame = +1

Query: 781 PPPPPXKKNXXXXPPXXXPPXPPPXXPRPXXKXKKXGXXXPPP 909
           PPPP   K     PP      P    P P    +      PPP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,679,558
Number of Sequences: 5004
Number of extensions: 19775
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)