Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_N02
         (1094 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.     30   2.5  
AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated...    30   2.5  
AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated...    30   2.5  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   3.3  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   3.3  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   3.3  

>AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.
          Length = 468

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +1

Query: 478 PPPPXPXGGFXXKKXXXRXXPXXXXXXXXGXXPPPPP 588
           P PP P GG           P        G  PPPPP
Sbjct: 216 PAPPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPPPPP 252


>AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated
           protein 34, isoform b protein.
          Length = 310

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +1

Query: 478 PPPPXPXGGFXXKKXXXRXXPXXXXXXXXGXXPPPPP 588
           P PP P GG           P        G  PPPPP
Sbjct: 202 PAPPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPPPPP 238


>AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated
           protein 34, isoform a protein.
          Length = 454

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +1

Query: 478 PPPPXPXGGFXXKKXXXRXXPXXXXXXXXGXXPPPPP 588
           P PP P GG           P        G  PPPPP
Sbjct: 202 PAPPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPPPPP 238


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +1

Query: 478 PPPPXPXGGFXXKKXXXRXXPXXXXXXXXGXXPPPPP 588
           PPPP P GG           P           PPPPP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 762


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +1

Query: 478 PPPPXPXGGFXXKKXXXRXXPXXXXXXXXGXXPPPPP 588
           PPPP P GG           P           PPPPP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 762


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +1

Query: 478 PPPPXPXGGFXXKKXXXRXXPXXXXXXXXGXXPPPPP 588
           PPPP P GG           P           PPPPP
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 345


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,850,781
Number of Sequences: 27780
Number of extensions: 245995
Number of successful extensions: 205
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2950351116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)