Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_N01
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...   152   7e-38
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|...   115   8e-27
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|...   110   3e-25
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    31   0.17 
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    30   0.39 
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   8.4  
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    26   8.4  

>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score =  152 bits (368), Expect = 7e-38
 Identities = 72/92 (78%), Positives = 84/92 (91%)
 Frame = +3

Query: 231 FPFGRIHRHLKXRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 410
           FP GR+ R LK +T ++ RVGA +AVYSAA+LEYLTAEVLELAGNA+KDLKVKRITPRHL
Sbjct: 66  FPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDLKVKRITPRHL 125

Query: 411 QLAIRGDEELDSLIKATIAGGGVIPHIHKSLI 506
           QLAIRGDEELD+LI+ATIAGGGV+PHI+K L+
Sbjct: 126 QLAIRGDEELDTLIRATIAGGGVLPHINKQLL 157


>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score =  115 bits (277), Expect = 8e-27
 Identities = 60/102 (58%), Positives = 74/102 (72%), Gaps = 1/102 (0%)
 Frame = +3

Query: 231 FPFGRIHRHLKXRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 410
           FP GR+HR L+    +  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI PRHL
Sbjct: 27  FPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHL 85

Query: 411 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 533
           QLAIR DEEL+ L+   TIA GGV+P+I+  L+ K+ G G P
Sbjct: 86  QLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQSGKGKP 127


>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 132

 Score =  110 bits (264), Expect = 3e-25
 Identities = 58/98 (59%), Positives = 71/98 (72%), Gaps = 1/98 (1%)
 Frame = +3

Query: 231 FPFGRIHRHLKXRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 410
           FP GR+HR L+    +  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI PRHL
Sbjct: 27  FPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHL 85

Query: 411 QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 521
           QLAIR DEEL+ L+   TIA GGV+P+I+  L+ K  G
Sbjct: 86  QLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKTSG 123


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = +3

Query: 225 SXFPFGRIHRHLKXRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 404
           S FP  RI + ++      G+V     V  +  LE     +++ +   ++  + KR+T  
Sbjct: 22  SRFPVARIKKIMQA-DQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLHQAKRVTVS 80

Query: 405 HLQLAIRGDEELDSL 449
           HL+ A++  E+ D L
Sbjct: 81  HLKHAVQSVEQFDFL 95


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 317 RYFGISYSRGFGVGGKCV*RFKSEAYYSSALTTCY 421
           +Y G +YS G  V GKCV +F +  +     +T Y
Sbjct: 311 QYLGTNYSNGTAVDGKCVTQFDNVGFLVGTSSTRY 345


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -3

Query: 430 SPLIASCKCRGVIRFTFKS-LDAFPANSKTSAVRYSKIAAE*TAAVAPTRP 281
           SPL   CKC G IR+  +  L  +  +SK +     K   E T   + + P
Sbjct: 19  SPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAKFEFTKVYSESMP 69


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 369 SKDLKV-KRITPRHLQLAIRGDEELDSLIKATIAGG 473
           +K+L + K +TP ++ + +  DE +DSLI+ +   G
Sbjct: 69  NKELSITKPLTPDNICMGVGSDEIIDSLIRISCIPG 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,975,277
Number of Sequences: 5004
Number of extensions: 55067
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)