Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_M21
(894 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0041 - 7669692-7670312 33 0.40
03_02_0485 - 8808139-8808618 32 0.71
03_02_0484 + 8805053-8805538 32 0.71
03_02_0483 - 8804021-8804485 32 0.71
01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,619... 31 0.94
04_04_1423 - 33455818-33457076,33457165-33457201 29 3.8
04_04_0939 - 29530242-29531087,29531406-29531597,29531690-295317... 29 5.0
03_02_0478 + 8775892-8776377 29 5.0
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 29 6.6
01_01_0227 + 1933247-1933699 29 6.6
05_01_0402 - 3173354-3173591,3173704-3173828,3174104-3174370,317... 28 8.7
04_04_0947 - 29583775-29583931,29584030-29584256 28 8.7
>11_02_0041 - 7669692-7670312
Length = 206
Score = 32.7 bits (71), Expect = 0.40
Identities = 21/55 (38%), Positives = 30/55 (54%)
Frame = +1
Query: 559 QFIRRYALPQGLFTRPRLESKLSSDGVLTVTAPKVLALPSTGXKIVPITHTGSCD 723
+F RR+ +P G R+ ++L DGVLTVT PKV ++V I G+ D
Sbjct: 141 RFWRRFRMPPGADVG-RVAARLD-DGVLTVTVPKVPGHRGREPRVVAIDGAGAGD 193
>03_02_0485 - 8808139-8808618
Length = 159
Score = 31.9 bits (69), Expect = 0.71
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 553 SRQFIRRYALPQGLFTRPRLESKLSSDGVLTVTAPK 660
S +F+RR+ LP+ T+P +GVLTVT PK
Sbjct: 111 SGKFLRRFRLPEN--TKPEQIKASMENGVLTVTVPK 144
>03_02_0484 + 8805053-8805538
Length = 161
Score = 31.9 bits (69), Expect = 0.71
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 553 SRQFIRRYALPQGLFTRPRLESKLSSDGVLTVTAPK 660
S +F+RR+ LP+ T+P +GVLTVT PK
Sbjct: 113 SGKFLRRFRLPEN--TKPEQIKASMENGVLTVTVPK 146
>03_02_0483 - 8804021-8804485
Length = 154
Score = 31.9 bits (69), Expect = 0.71
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 553 SRQFIRRYALPQGLFTRPRLESKLSSDGVLTVTAPK 660
S +F+RR+ LP+ T+P +GVLTVT PK
Sbjct: 106 SGKFLRRFRLPEN--TKPEQIKASMENGVLTVTVPK 139
>01_01_0009 +
57658-60086,60855-60935,61094-61295,61385-61905,
61996-62114,62248-62345
Length = 1149
Score = 31.5 bits (68), Expect = 0.94
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 693 CSNNTYWXL*XXXSGSQEPSACXWCSRI 776
CS YW SG + SAC WC R+
Sbjct: 804 CSCGDYWHQCDVKSGDSKGSACGWCERM 831
>04_04_1423 - 33455818-33457076,33457165-33457201
Length = 431
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -1
Query: 483 HIYFIR*KMLYVDIDLKLLVVGCDFRAHLXEAPFDSSPKPAARSVSLRFL 334
HI +R D D+K LV + L FDSSP PAA + L
Sbjct: 156 HINLVRLYGFCFDADVKALVYEYMEKGSLDRYLFDSSPSPAAERIGFEKL 205
>04_04_0939 -
29530242-29531087,29531406-29531597,29531690-29531770,
29532300-29532428,29532579-29532650,29532761-29532829,
29533809-29533891,29534101-29534203,29534289-29534402,
29536230-29536274
Length = 577
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +3
Query: 111 RTNKKRCQFCHTCTIWRDHFV*WIENSSARR 203
R N K C+ C C DH W+ N R+
Sbjct: 117 RKNSKHCRSCDKCVDGFDHHCRWLNNCVGRK 147
>03_02_0478 + 8775892-8776377
Length = 161
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 553 SRQFIRRYALPQGLFTRPRLESKLSSDGVLTVTAPK 660
S +F+RR+ LP +P +GVLTVT PK
Sbjct: 113 SGKFLRRFRLPDN--AKPEQIKASMENGVLTVTVPK 146
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 241 MHRLVERRHPVEILRAEEFSIHQTKWSL-QIVHVWQN*HR 125
+H+ +RH +E L ++ S HQ + Q H WQ HR
Sbjct: 737 LHKYANKRHSLEELPSDTSSPHQKHHQMSQEKHHWQQKHR 776
>01_01_0227 + 1933247-1933699
Length = 150
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +1
Query: 553 SRQFIRRYALPQGLFTRPRLESKLSSDGVLTVTAPK 660
S +F RR+ LP+G R S +GVLTVT PK
Sbjct: 102 SGKFQRRFRLPRG--ARVDQVSASMDNGVLTVTVPK 135
>05_01_0402 -
3173354-3173591,3173704-3173828,3174104-3174370,
3174488-3174856,3175099-3175608
Length = 502
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -1
Query: 855 LLKKVYKTSXQHKIRISLKIIXITLDKSYYTXDRLKAPEIPTXXITGXSMCYWNNL 688
++ KV+ ++ KI + + IT DKS Y + A +P +T + W L
Sbjct: 81 IVSKVFNSNRVVKIPHTSPLASITADKSRYVPPEVVAIRVPLLHLTNFQINDWPEL 136
>04_04_0947 - 29583775-29583931,29584030-29584256
Length = 127
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 269 EXETFCSGHDASIG*KATSCRNPAGRRVLDPSDE 168
+ E SGH AS A S R P GR DP D+
Sbjct: 12 DIEAGFSGHSASPVKPAASPRRPGGRLFCDPCDD 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,626,121
Number of Sequences: 37544
Number of extensions: 357393
Number of successful extensions: 898
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -