Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_M20
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce...    35   0.014
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    31   0.17 
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    26   6.4  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    26   8.5  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   8.5  

>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 473

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 695 NEWFASGAADXVRKYGDXASGKLKVSLT 778
           N+WF +GA D   K  D ASG LK++LT
Sbjct: 175 NQWFCTGAGDRTIKIWDLASGVLKLTLT 202



 Score = 31.5 bits (68), Expect = 0.17
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 652 GHLGWXRCVAVEPXK*VVCFRCR*QXEEVW 741
           GHLGW RCV VEP     C     +  ++W
Sbjct: 161 GHLGWVRCVDVEPGNQWFCTGAGDRTIKIW 190


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
 Frame = +1

Query: 382 LRTSHGCSAEGS----GPETTRVCHL*T*NSTDHSRNSGNCTFAVGRGCCPILWTNTFTV 549
           L TS  C+   S    G  TT V       S+     + NCT +       + +T+T  V
Sbjct: 387 LSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTS-----VPYTST-PV 440

Query: 550 TSSPLGGFNCTTETAV-YAXTKMAPT 624
           TS+PL   NCTT T+V Y  T +  T
Sbjct: 441 TSTPLATTNCTTSTSVPYTSTPVTST 466



 Score = 29.9 bits (64), Expect = 0.52
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +1

Query: 523 ILWTNTFTVTSSPLGGFNCTTETAV 597
           +L+T+T  VTS+PL   NCTT T+V
Sbjct: 538 VLYTST-PVTSTPLATTNCTTSTSV 561



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 529 WTNTFTVTSSPLGGFNCTTETAV-YAXTKMAPT 624
           +T+T  VTS+PL   NCTT T++ Y  T +  T
Sbjct: 458 YTST-PVTSTPLTTTNCTTSTSIPYTSTPVTST 489



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +1

Query: 523 ILWTNTFTVTSSPLGGFNCTTETAV 597
           I +T+T  VTS+PL   NCTT T+V
Sbjct: 479 IPYTST-PVTSTPLTTTNCTTSTSV 502



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 547 VTSSPLGGFNCTTETAV-YAXTKMAPT 624
           VTS+P+   NCTT T+V Y  T +  T
Sbjct: 522 VTSTPVTTTNCTTSTSVLYTSTPVTST 548


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 227 IMSEDVIKHSVHTLVFRSLKRSHDMFLANQGM 322
           I S+D  K S H+ V + L    D FL N+G+
Sbjct: 325 IGSKDPKKRSTHSYVAKILNPEWDAFLKNEGV 356


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -3

Query: 237 SDIMKLLINV*NYLKNTKYY*XCNIKSSI*IQFYF*LMHIPYDSYE--KLFGFNGVETKK 64
           SD MKL  N+ + LKN K      IK+S+ +        IP  S E   L G N      
Sbjct: 742 SDAMKLTNNIADALKNNKVN-IGTIKASLEVLVKCIAPIIPCFSSECWLLLGHNSSVYSN 800

Query: 63  YPTNQNLKE 37
           +P ++N KE
Sbjct: 801 WPISKNKKE 809


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/41 (24%), Positives = 25/41 (60%)
 Frame = +2

Query: 308 ANQGMLPPIDDKAEKVLKLVKARDSYGQVMGAVRKAQALKQ 430
           +N+ +L  + ++ +++L   +  DS+  ++G   + QAL+Q
Sbjct: 352 SNETLLQTLTEQTDQLLSFKETMDSFKFILGPSMENQALQQ 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,046,376
Number of Sequences: 5004
Number of extensions: 56327
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)