Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_M20
         (905 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0939 + 12571052-12571173,12571219-12571309,12571413-125715...    40   0.003
05_03_0484 + 14599786-14602197                                         30   2.2  
04_04_0905 - 29290998-29291486                                         30   2.2  
05_03_0488 - 14651532-14652265,14652404-14653988                       28   8.9  
03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423     28   8.9  

>03_02_0939 +
           12571052-12571173,12571219-12571309,12571413-12571512,
           12571726-12571807,12571897-12571953,12572632-12572713,
           12572792-12572884,12573984-12574047,12574161-12574246,
           12574329-12574430,12574526-12574609,12574885-12574945,
           12575010-12575091,12575173-12575250,12575867-12575931,
           12576108-12576185,12576278-12576450
          Length = 499

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 22/55 (40%), Positives = 32/55 (58%)
 Frame = +2

Query: 695 NEWFASGAADXVRKYGDXASGKLKVSLTWTCEFSKRSGSVTKTSIFIXPAVXDRQ 859
           NEWF +G+AD   K  D ASG LK++LT   E   R  +V++   ++  A  D+Q
Sbjct: 196 NEWFCTGSADRTIKIWDLASGTLKLTLTGHIE-QIRGLAVSQRHTYLFSAGDDKQ 249



 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +2

Query: 233 SEDVIKHSVHTLVFRSLKRSHDMFLANQGMLPPIDDKAEKVLKLVKARDSYGQVMGA 403
           +E V   S+  L  +SLKRSHD+F     +L   D +        K    +G V+ A
Sbjct: 4   AEPVEPQSLKKLSLKSLKRSHDLFAPTHSLLFTPDPERTLTALFAKLFPPFGLVVVA 60


>05_03_0484 + 14599786-14602197
          Length = 803

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 477 KQWKLHLCRRKGLLSHTLDQHLHRHQLPP 563
           + W L  C++KG+L   +D HLH    PP
Sbjct: 684 RDWALS-CQKKGMLGKIIDPHLHGEISPP 711


>04_04_0905 - 29290998-29291486
          Length = 162

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = +1

Query: 409 EGSGPETTRVCHL*T*NSTDHSRNSGNCTFAVGRGC 516
           E   P T RVC L    +TD  R  GNCT A   GC
Sbjct: 94  ESGYPATCRVC-LERLEATDEVRRLGNCTHAFHIGC 128


>05_03_0488 - 14651532-14652265,14652404-14653988
          Length = 772

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 477 KQWKLHLCRRKGLLSHTLDQHLHRHQLP 560
           + W L  CR+KG+LS  +D HL     P
Sbjct: 659 RDWALS-CRKKGILSEIIDPHLQGEITP 685


>03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423
          Length = 529

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +2

Query: 344 AEKVLKLVKARDSYGQVMGAVRKAQALKQQESVTCRPETPLTTAETVETAPL 499
           A+ +  L +ARD   + + A+ +A A +++ S  CR  TPL    T  TA L
Sbjct: 91  ADIIAVLRRARDIRAR-LEAMDRANAAQRRLSAGCREGTPLDRTRTALTAAL 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,604,760
Number of Sequences: 37544
Number of extensions: 367147
Number of successful extensions: 785
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)