Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_M18
         (1037 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.20 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.62 

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -1

Query: 530 PPPXFXXKKXPPXPPPXGXKKK 465
           PPP F     PP PPP G  KK
Sbjct: 14  PPPGFEPPSQPPPPPPPGYVKK 35



 Score = 27.9 bits (59), Expect = 2.5
 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = -2

Query: 706 PPPPPX--PXXXXPPPXXKXKKKKKKKK 629
           PPPPP   P    PPP      KK+K K
Sbjct: 12  PPPPPGFEPPSQPPPPPPPGYVKKRKNK 39


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 16/42 (38%), Positives = 16/42 (38%)
 Frame = -1

Query: 530 PPPXFXXKKXPPXPPPXGXKKKXTXXGXPPXXPPQKKXFXGG 405
           PPP       PP PPP G        G PP  PP      GG
Sbjct: 752 PPPAPIMGGPPPPPPPPG----VAGAGPPPPPPPPPAVSAGG 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,783,591
Number of Sequences: 5004
Number of extensions: 21533
Number of successful extensions: 202
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 543234592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)