Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_M18
(1037 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.4
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 27 2.7
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 5.4
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 29 5.4
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 26 5.6
U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (gr... 28 9.5
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 28 9.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 9.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 9.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 9.5
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 1.8
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -1
Query: 530 PPPXFXXKKXPPXPPPXGXKKKXTXXGXPPXXPP 429
PPP PP PPP G K G PP PP
Sbjct: 762 PPPPGGCPPPPPPPPPGGFK-----GGPPPPPPP 790
Score = 28.3 bits (60), Expect = 9.5
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Frame = -1
Query: 530 PPPXFXX-KKXPPXPPPXGXKKKXTXXGXPPXXPP 429
PPP PP PPP G T G PP PP
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPIT-GGPPPPPPP 748
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 1.8
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -1
Query: 530 PPPXFXXKKXPPXPPPXGXKKKXTXXGXPPXXPP 429
PPP PP PPP G K G PP PP
Sbjct: 762 PPPPGGCPPPPPPPPPGGFK-----GGPPPPPPP 790
Score = 28.3 bits (60), Expect = 9.5
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Frame = -1
Query: 530 PPPXFXX-KKXPPXPPPXGXKKKXTXXGXPPXXPP 429
PPP PP PPP G T G PP PP
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPIT-GGPPPPPPP 748
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 1.8
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -1
Query: 530 PPPXFXXKKXPPXPPPXGXKKKXTXXGXPPXXPP 429
PPP PP PPP G K G PP PP
Sbjct: 345 PPPPGGCPPPPPPPPPGGFK-----GGPPPPPPP 373
Score = 28.3 bits (60), Expect = 9.5
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Frame = -1
Query: 530 PPPXFXX-KKXPPXPPPXGXKKKXTXXGXPPXXPP 429
PPP PP PPP G T G PP PP
Sbjct: 298 PPPGLPPITGGPPPPPPPGGLPPIT-GGPPPPPPP 331
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 2.4
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = -1
Query: 530 PPPXFXXKKXPPXPPPXGXKKKXTXXGXPPXXPPQK 423
PPP PP PPP G PP PP +
Sbjct: 289 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSR 324
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 2.4
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = -1
Query: 530 PPPXFXXKKXPPXPPPXGXKKKXTXXGXPPXXPPQK 423
PPP PP PPP G PP PP +
Sbjct: 299 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSR 334
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 27.5 bits (58), Expect(2) = 2.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -2
Query: 706 PPPPPXPXXXXPPP 665
PPPPP P PPP
Sbjct: 87 PPPPPPPTLKAPPP 100
Score = 21.0 bits (42), Expect(2) = 2.7
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -2
Query: 721 KXXXXPPPPPXP 686
K PPPPP P
Sbjct: 64 KATPPPPPPPPP 75
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.1 bits (62), Expect = 5.4
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = -1
Query: 530 PPPXFXXKKXPPXPPPXGXKKKXTXXGXPPXXPP 429
PPP F PP P G G PP PP
Sbjct: 86 PPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPP 119
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 29.1 bits (62), Expect = 5.4
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -1
Query: 755 GGGGGXXXXXKKXXXXPXPPPXXPXXXPPP 666
GGGGG + P PPP P P P
Sbjct: 83 GGGGGGYGRPQGYVPPPPPPPTQPEPEPEP 112
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 26.2 bits (55), Expect(2) = 5.6
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = -2
Query: 532 PPPLXFXKKXXPPXPPPXGXKKKXXXXGXPXXXPP 428
PPP PP PPP K P PP
Sbjct: 1346 PPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPP 1380
Score = 26.2 bits (55), Expect(2) = 5.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -2
Query: 532 PPPLXFXKKXXPPXPPPXGXKKK 464
PPPL PP PPP ++K
Sbjct: 1379 PPPLFSPSMILPPPPPPLPSEEK 1401
Score = 21.0 bits (42), Expect(2) = 5.6
Identities = 7/23 (30%), Positives = 10/23 (43%)
Frame = -2
Query: 697 PPXPXXXXPPPXXKXKKKKKKKK 629
PP P P P KK+ ++
Sbjct: 1286 PPQPSESCPAPPKNSSKKRNNRR 1308
Score = 21.0 bits (42), Expect(2) = 5.6
Identities = 10/24 (41%), Positives = 10/24 (41%), Gaps = 4/24 (16%)
Frame = -2
Query: 706 PPPPPX----PXXXXPPPXXKXKK 647
PPPPP P PPP K
Sbjct: 1344 PPPPPSDDLTPVPPPPPPPPTMSK 1367
>U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (grd
related) protein 9 protein.
Length = 318
Score = 28.3 bits (60), Expect = 9.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 706 PPPPPXPXXXXPPPXXKXKKKK 641
PPPPP P PPP + ++++
Sbjct: 134 PPPPPSPPPPPPPPPPQLQQQQ 155
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 28.3 bits (60), Expect = 9.5
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -1
Query: 755 GGGGGXXXXXKKXXXXPXPPPXXPXXXPPP 666
GGGGG P PPP PPP
Sbjct: 25 GGGGGGGCAPAAPACAPPPPPMCGCAPPPP 54
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 9.5
Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Frame = -1
Query: 530 PPPXFXXKKXPPX----PPPXGXKKKXTXXGXPPXXPPQK 423
PPP PP PPP G G PP PP +
Sbjct: 265 PPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPR 304
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 9.5
Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Frame = -1
Query: 530 PPPXFXXKKXPPX----PPPXGXKKKXTXXGXPPXXPPQK 423
PPP PP PPP G G PP PP +
Sbjct: 286 PPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPR 325
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 9.5
Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Frame = -1
Query: 530 PPPXFXXKKXPPX----PPPXGXKKKXTXXGXPPXXPPQK 423
PPP PP PPP G G PP PP +
Sbjct: 271 PPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPR 310
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,497,653
Number of Sequences: 27780
Number of extensions: 242403
Number of successful extensions: 3453
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2711
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2751568594
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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