Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_M16
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    31   0.22 
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    27   3.5  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    26   8.1  

>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +2

Query: 311 IGGSWPPAPREPECADYGSMSKHSTATMQRNSHNDRVKSANLIAHLAPDRRRIKSTSSNS 490
           + G +  +P EP  +   S+   S        HND  ++ N I  L P R+    +SS +
Sbjct: 173 VSGDYSDSPLEPSSSSSFSVPPESLNPTLSFQHNDVPQTDNFIPFLTPKRQAYGQSSSRA 232

Query: 491 PILSTEENQ 517
              S   +Q
Sbjct: 233 DRSSVRRSQ 241


>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 458 RRRIKSTSSNSPILSTEENQQKPKMIQEPKTVE 556
           +R      SN+ +LSTEEN  K K +   K V+
Sbjct: 23  KRMANKGESNTNMLSTEENIVKAKAVSRKKPVD 55


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 686 RFRLVKYLPKLLESAPQPEVNPKLENR 606
           R RLV Y   LL++ P  EV+P L+ R
Sbjct: 647 RSRLVPYQKFLLQTFPLNEVSPSLDPR 673


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,425
Number of Sequences: 5004
Number of extensions: 55870
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)