Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_M16
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006833-9|AAF60943.1|  318|Caenorhabditis elegans Saposin-like ...    31   0.82 
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass...    30   2.5  
Z49071-6|CAA88876.2|  292|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z48334-4|CAB61010.2|  426|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z29094-16|CAA82345.2|  184|Caenorhabditis elegans Hypothetical p...    28   7.6  
AF143297-1|AAD33902.1|  426|Caenorhabditis elegans tubby homolog...    28   7.6  
AF016430-3|AAB65369.1|  370|Caenorhabditis elegans Hypothetical ...    28   7.6  

>AC006833-9|AAF60943.1|  318|Caenorhabditis elegans Saposin-like
           protein family protein7 protein.
          Length = 318

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 380 STATMQRNSHNDRVKSANLIAHLAPDRRRIKSTSSNSPILSTEENQQKPKMIQEPK 547
           S   ++R  HNDR+   N++  + P   R K  S N+ + S+ E   + + I E +
Sbjct: 188 SIEQVRREEHNDRIGHKNVLEIIIPPPLRSKYMSRNTIVESSREKVPEKEEIDEKR 243


>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 278 protein.
          Length = 1130

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
 Frame = +2

Query: 311 IGGSWPPAP---REPEC----ADYGSMSKHSTATMQRNSHNDRVKSANLIAHLAPDRRRI 469
           +GG  PP+P   R P      +    +S+HS A+ + +  N  + S   ++H+A +  R 
Sbjct: 52  VGGPAPPSPVLRRAPSGPISPSPISPVSQHSRASSRHDIDNTSLLSILKLSHVARESSR- 110

Query: 470 KSTSSNSPILSTEENQQKPKMIQEPKTV 553
            ++ +NSP  +  E + K K+    +TV
Sbjct: 111 NTSRNNSPQPAGRETELKRKIQTLEETV 138


>Z49071-6|CAA88876.2|  292|Caenorhabditis elegans Hypothetical
           protein T22C8.4 protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +2

Query: 371 SKHSTATMQRNSHNDRVKSANLIAHLAPDRRRI-KSTSSNSPILSTEENQQKPKMIQEPK 547
           + +ST+T   +   D    +  ++ +AP RRRI KS++S+   +   E+  K K+ +E K
Sbjct: 60  TSNSTSTSFGSDQMDIENHSPKLSGVAPKRRRIDKSSTSSEAKIQRMEDAMKKKLEKEQK 119


>Z48334-4|CAB61010.2|  426|Caenorhabditis elegans Hypothetical
           protein F10B5.4 protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +2

Query: 362 GSMSKHSTATMQRNSHNDRVKSANLIAHLAPDRRRIKSTSSNSPILSTEENQQKPKMIQE 541
           GS+   STA M  NS  D     N +     D   + S S N+P++ T++   +P+M   
Sbjct: 33  GSVRTTSTA-MSMNSMKDYPTFDNSLPFSISDNSSV-SVSMNTPLIPTQDPIAQPRMQSM 90

Query: 542 PK 547
           P+
Sbjct: 91  PR 92


>Z29094-16|CAA82345.2|  184|Caenorhabditis elegans Hypothetical
           protein C07A9.9 protein.
          Length = 184

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +2

Query: 347 ECADYGSMSKHSTATMQRNSHNDRVKSANLIAHLAPDRRRIKSTSSNSPILSTEENQQ 520
           +C+D+ S+ KH    M R+S  D  KS  L A      R I S +     L++E + +
Sbjct: 87  DCSDHSSLCKHCCYEMIRDSIKD-YKSGPLYARCPQCFRNISSLTRRKRRLTSEGHDE 143


>AF143297-1|AAD33902.1|  426|Caenorhabditis elegans tubby homolog
           protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +2

Query: 362 GSMSKHSTATMQRNSHNDRVKSANLIAHLAPDRRRIKSTSSNSPILSTEENQQKPKMIQE 541
           GS+   STA M  NS  D     N +     D   + S S N+P++ T++   +P+M   
Sbjct: 33  GSVRTTSTA-MSMNSMKDYPTFDNSLPFSISDNSSV-SVSMNTPLIPTQDPIAQPRMQSM 90

Query: 542 PK 547
           P+
Sbjct: 91  PR 92


>AF016430-3|AAB65369.1|  370|Caenorhabditis elegans Hypothetical
           protein C05C8.2 protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 404 SHNDRVKSANLIAHLAPDRRRIKSTSSNSPILSTEENQQKPK 529
           S ND +K AN  A+L   R++++S ++       +  + KPK
Sbjct: 234 SKNDELKDANWDAYLPNYRKKVQSATTTKEAKKKKAYKMKPK 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,328,240
Number of Sequences: 27780
Number of extensions: 322884
Number of successful extensions: 860
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)