Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_M15
(847 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 63 3e-10
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 30 2.0
08_02_0365 - 16271106-16271327,16271504-16272241,16273034-16273120 29 3.5
08_02_0226 - 14480461-14481199,14481399-14482243 29 3.5
05_04_0448 - 21349877-21349990,21350263-21350338,21350418-213505... 29 4.7
01_06_1545 + 38144624-38145301 29 4.7
08_02_0406 + 16813099-16813166,16813914-16814480,16814549-168145... 29 6.2
04_03_0250 - 13477020-13477550,13477572-13477933,13478026-134786... 29 6.2
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 62.9 bits (146), Expect = 3e-10
Identities = 46/152 (30%), Positives = 77/152 (50%)
Frame = +3
Query: 147 MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSK 326
MAP Y D+GKK D+ + Y K L T + GV T+ T ES VFG L ++
Sbjct: 1 MAPGLYTDIGKKTRDLLYRDYGTH-HKFTLTTCTPEGVTITAAGTRKNES--VFGELQTQ 57
Query: 327 FAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTND 506
+K+ LT K N+++ L T +T+ + GLK L Q ++GKL+ + ++
Sbjct: 58 --LKNKKLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQ---RSGKLELQYLHE 112
Query: 507 TVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGV 602
+N ++ L+ + P+V+++ V + GV
Sbjct: 113 YAGINASVGLN-SNPMVNLSGVFGSKELSVGV 143
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 30.3 bits (65), Expect = 2.0
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +3
Query: 156 PYYADLGKKANDVFSKGYHFGVFKLDLKTKS--ESGVEFTSGITSNQESGKVFGSLSSKF 329
P Y G + D+ SK +H LDL S + G++F SG+ S + V L+ +
Sbjct: 261 PQYVH-GTQLPDLESKFFH-----LDLMHPSVYKVGLQFLSGVISGGNACCVAMLLAFRE 314
Query: 330 AVKDYGLTFTEKWNTDNT 383
A+KDY T+ N D T
Sbjct: 315 AIKDYSTPSTKTLNRDLT 332
>08_02_0365 - 16271106-16271327,16271504-16272241,16273034-16273120
Length = 348
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -2
Query: 714 PKSLP-LSTFVWRAKSPDW*PRAKLFLENFAFCVSNWV*HQPANPGSLV 571
P + P L+ F W ++ + P A+L F C S V PA P V
Sbjct: 98 PSAFPKLAVFAWMCRTCGFAPTAELLATLFTACASTKVVQTPAGPRKTV 146
>08_02_0226 - 14480461-14481199,14481399-14482243
Length = 527
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -2
Query: 822 GVLRSKLRIMXQPSPXVHFMLTPQSSLSDTFW*IEPPKSLPLSTFVWRAK 673
G L SK+ + +P P + T + SDT EP L L F WR K
Sbjct: 430 GALPSKIHVNIEPPPPPAAVATGEPRTSDT---AEPKIVLVLERFSWRLK 476
>05_04_0448 -
21349877-21349990,21350263-21350338,21350418-21350504,
21350706-21350771,21350855-21350925,21351030-21351116,
21351201-21351314,21351612-21351678,21351807-21351868,
21351960-21352085,21352091-21352381
Length = 386
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -3
Query: 743 CQIPSGRLNRRNLYHCLRLCGEQSHQIGNLEQSCSWRTLLFVYQTGCDTSQP 588
C+ + +N+ L + L G+ + Q N + TLLF++ CD P
Sbjct: 44 CKFVASAVNKAGLAKLIGLAGDTNVQASNPISDPLYSTLLFLHTNPCDGGWP 95
>01_06_1545 + 38144624-38145301
Length = 225
Score = 29.1 bits (62), Expect = 4.7
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = -1
Query: 589 QPW*FSTAATSTTGPAKSRSKL---VFTATVSLV---NEVFNFP--VLVPVCGAKVPSRV 434
QP +TAA+S++ P SRSK+ + TVS E N V+VP A P+RV
Sbjct: 29 QPQLAATAASSSSSPFSSRSKIGKDIIDKTVSFTLYQQETMNRTGYVVVPGVDAPAPARV 88
Query: 433 TLRPA 419
+ A
Sbjct: 89 VVSDA 93
>08_02_0406 +
16813099-16813166,16813914-16814480,16814549-16814595,
16814787-16815484
Length = 459
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -2
Query: 714 PKSLP-LSTFVWRAKSPDW*PRAKLFLENFAFCVSNWV*HQPANPGSLV 571
P + P L+ F W ++ + P AKLF F C + + PA P V
Sbjct: 119 PLAFPKLAVFAWMCQTCGFAPTAKLFAVLFTACATTKDVNMPAGPKKTV 167
>04_03_0250 -
13477020-13477550,13477572-13477933,13478026-13478682,
13480142-13480232
Length = 546
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -2
Query: 714 PKSLP-LSTFVWRAKSPDW*PRAKLFLENFAFCVSNWV*HQPANP 583
P + P L+ F W ++ + P A+LF F C S PA P
Sbjct: 72 PSAFPKLAVFAWMCRTCGFVPTAELFATLFTACASTKDVQTPAGP 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,852,269
Number of Sequences: 37544
Number of extensions: 457025
Number of successful extensions: 1213
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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