Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_M14
(863 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 38 0.002
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.37
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.49
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.64
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 0.85
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.6
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 27 2.6
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 4.5
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 37.9 bits (84), Expect = 0.002
Identities = 23/83 (27%), Positives = 27/83 (32%), Gaps = 2/83 (2%)
Frame = +1
Query: 508 PPPAPXXXXPXXXXXXXFSPSPXPQVPRXXXXLXXPPPPEXXXXXXS--PPPXPXXPXSR 681
PP AP P S P P +P P P + S PP P P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Query: 682 XPTXXNXPXXXPPXXPXPXPXXL 750
P+ + P PP P P L
Sbjct: 184 PPSAPSLPSAVPPMPPKVPPPPL 206
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.37
Identities = 17/55 (30%), Positives = 18/55 (32%)
Frame = +1
Query: 508 PPPAPXXXXPXXXXXXXFSPSPXPQVPRXXXXLXXPPPPEXXXXXXSPPPXPXXP 672
PPP P P +P P P PPPP PPP P P
Sbjct: 733 PPPPPAVIVPTPAP----APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/39 (30%), Positives = 13/39 (33%)
Frame = +1
Query: 604 LXXPPPPEXXXXXXSPPPXPXXPXSRXPTXXNXPXXXPP 720
L PPPP +P P P P P PP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.9 bits (64), Expect = 0.49
Identities = 25/80 (31%), Positives = 26/80 (32%), Gaps = 2/80 (2%)
Frame = -1
Query: 740 GXGXGXXGGXXXGXLXXVGXRXXGXXGXGGGEXXXXXXSGG--GGXXXXXXXRGTWGXGE 567
G G G GG G G G G GGE GG GG G +G G
Sbjct: 187 GGGFGGFGGGSGGP--PPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP 244
Query: 566 GEKXXXXXXXGXXXXGAGGG 507
G G G GGG
Sbjct: 245 GGFGGGLGGFGGGPGGFGGG 264
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.5 bits (63), Expect = 0.64
Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Frame = +3
Query: 612 PPPPGTGPXXXLXSPSXPXSXXTLPHXX--QXXPXSSPXXSXPLPXXPPXPPQXXPXXXX 785
PPPP + P + + P +P + PLP PP PP P
Sbjct: 192 PPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLPPQST 251
Query: 786 PHXXLPXXS 812
LP S
Sbjct: 252 NTSQLPMPS 260
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/49 (28%), Positives = 15/49 (30%)
Frame = +1
Query: 508 PPPAPXXXXPXXXXXXXFSPSPXPQVPRXXXXLXXPPPPEXXXXXXSPP 654
PPP P P P P V + PPPP PP
Sbjct: 238 PPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRPP 286
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +3
Query: 657 SXPXSXXTLPHXXQXXPXSSPXXSXPLPXXPPXPPQXXP 773
S P S + P Q ++P S P PP PP P
Sbjct: 159 SAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.1 bits (62), Expect = 0.85
Identities = 20/62 (32%), Positives = 20/62 (32%)
Frame = -3
Query: 744 SRXGGGXXXGXTXGXVXGRGXA*XXXXGXRGRXXXXXXXFRGGGXXEXXXXAGDLGXXGG 565
SR G G G G GRG G RG RGG G G GG
Sbjct: 7 SRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66
Query: 564 GK 559
K
Sbjct: 67 AK 68
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/57 (33%), Positives = 20/57 (35%)
Frame = -3
Query: 663 GXRGRXXXXXXXFRGGGXXEXXXXAGDLGXXGGGKXXXRGGXGGXXXXGXGXGXLVG 493
G RG F GG G G GGG+ RGG GG G G G
Sbjct: 9 GGRGGSRGGRGGFNGG---RGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSG 62
Score = 27.5 bits (58), Expect = 2.6
Identities = 20/62 (32%), Positives = 21/62 (33%)
Frame = -3
Query: 717 GXTXGXVXGRGXA*XXXXGXRGRXXXXXXXFRGGGXXEXXXXAGDLGXXGGGKXXXRGGX 538
G G GRG G RG RGGG G G GG+ GG
Sbjct: 9 GGRGGSRGGRG----GFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGR 64
Query: 537 GG 532
GG
Sbjct: 65 GG 66
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +1
Query: 613 PPPPEXXXXXXSPPPXPXXPXSRXPTXXNXPXXXPPXXPXP 735
PPPP S PP P P S P P P P P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPP--LPASSAPSVPNP 1746
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/52 (26%), Positives = 17/52 (32%)
Frame = +2
Query: 680 AXPRPXTXPXVXPXXXPPPXLXSSXPPXXXXXXPLXPRXXPXSLXPXXXSXP 835
A P + P V P PP + + PP P P P P P
Sbjct: 1682 APAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 2.0
Identities = 23/101 (22%), Positives = 26/101 (25%), Gaps = 2/101 (1%)
Frame = +1
Query: 508 PPPAPXXXXPXXXXXXXFSPSPXPQ--VPRXXXXLXXPPPPEXXXXXXSPPPXPXXPXSR 681
P PAP P P P P VP PP P+ P P
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP 1143
Query: 682 XPTXXNXPXXXPPXXPXPXPXXLXXPXXXXXXSXXPTXXSP 804
P+ P P P + P S P P
Sbjct: 1144 KPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKP 1184
Score = 27.5 bits (58), Expect = 2.6
Identities = 21/81 (25%), Positives = 23/81 (28%), Gaps = 3/81 (3%)
Frame = +1
Query: 508 PPPAPXXXXPXXXXXXXFSPSPXPQV---PRXXXXLXXPPPPEXXXXXXSPPPXPXXPXS 678
P P P P P P P V P PP P+ PP P
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPV 1200
Query: 679 RXPTXXNXPXXXPPXXPXPXP 741
P+ P PP P P
Sbjct: 1201 PKPS-VGVPPVPPPSTAPPVP 1220
Score = 26.2 bits (55), Expect = 6.0
Identities = 22/73 (30%), Positives = 24/73 (32%)
Frame = +1
Query: 517 APXXXXPXXXXXXXFSPSPXPQVPRXXXXLXXPPPPEXXXXXXSPPPXPXXPXSRXPTXX 696
AP P PS P VP PP P+ S PP P S P+
Sbjct: 1021 APPVPLPSADAPPIPVPSTAPPVP---IPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIP 1077
Query: 697 NXPXXXPPXXPXP 735
P PP P P
Sbjct: 1078 -APSGAPP-VPAP 1088
Score = 26.2 bits (55), Expect = 6.0
Identities = 16/66 (24%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Frame = +1
Query: 565 PSPXPQVPRXXXXLXXPPPPEXXXXXXSPPPXPXXPXSRXPTXXNXPXXXPP-XXPXPXP 741
P+P ++P PP P P P P P+ P P P P P
Sbjct: 1067 PAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP 1126
Query: 742 XXLXXP 759
P
Sbjct: 1127 SVAAPP 1132
Score = 26.2 bits (55), Expect = 6.0
Identities = 20/78 (25%), Positives = 22/78 (28%)
Frame = +1
Query: 508 PPPAPXXXXPXXXXXXXFSPSPXPQVPRXXXXLXXPPPPEXXXXXXSPPPXPXXPXSRXP 687
P PAP P P P VP PP P+ PP P P
Sbjct: 1170 PVPAPSSGIPPV-------PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
Query: 688 TXXNXPXXXPPXXPXPXP 741
+ P P P P
Sbjct: 1223 SAGLPPVPVPTAKAPPVP 1240
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.6
Identities = 22/84 (26%), Positives = 24/84 (28%), Gaps = 6/84 (7%)
Frame = +1
Query: 508 PPPAPXXXX----PXXXXXXXFSPSPXPQVPRXXXXLXXPPPPEXXXXXXSPPPXPXXPX 675
PPP P P S P P PR P PP+ PPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372
Query: 676 SR--XPTXXNXPXXXPPXXPXPXP 741
R P + PP P P
Sbjct: 373 GRQPPPLSSSRAVSNPPAPPPAIP 396
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/67 (25%), Positives = 19/67 (28%), Gaps = 2/67 (2%)
Frame = +1
Query: 565 PSPXPQVPRXXXXLXXPPPPEXXXXXXSPPPXPXXPXSRXPTXXNXP--XXXPPXXPXPX 738
P+P P L PP + PP P P P PP P P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Query: 739 PXXLXXP 759
P P
Sbjct: 478 PAPAPAP 484
Score = 27.1 bits (57), Expect = 3.4
Identities = 17/60 (28%), Positives = 19/60 (31%)
Frame = +1
Query: 562 SPSPXPQVPRXXXXLXXPPPPEXXXXXXSPPPXPXXPXSRXPTXXNXPXXXPPXXPXPXP 741
S P +VP P PP SPP P P + P N P P P
Sbjct: 238 SSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIA--PVSMNPAINSTSKPPLPPP 295
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/59 (27%), Positives = 19/59 (32%)
Frame = +1
Query: 565 PSPXPQVPRXXXXLXXPPPPEXXXXXXSPPPXPXXPXSRXPTXXNXPXXXPPXXPXPXP 741
P+P P +P PP S PP P P + P PP P P
Sbjct: 389 PAPPPAIPGRSAPAL---PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAP 444
Score = 26.6 bits (56), Expect = 4.5
Identities = 18/63 (28%), Positives = 21/63 (33%)
Frame = +2
Query: 614 PPPRNXXXXSXXLPLXPXXXXHAXPRPXTXPXVXPXXXPPPXLXSSXPPXXXXXXPLXPR 793
PPP + LP + P T P + P PP L S PP P P
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSA--PPSLPPSAPPSLPMGAPAAPP 448
Query: 794 XXP 802
P
Sbjct: 449 LPP 451
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 27.5 bits (58), Expect = 2.6
Identities = 19/63 (30%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Frame = +1
Query: 565 PSPXPQVPRXXXXLXXPPPPEXXXXXXSPPPXPXXP-----XSRXP-TXXNXPXXXPPXX 726
P P PQVP + P P PP P P +R P N P P
Sbjct: 155 PPPVPQVPSHWYPVSLPSPNLPHQPISKPPVIPNLPKLQVHPNRLPHPIHNHPYSSPTSY 214
Query: 727 PXP 735
P P
Sbjct: 215 PPP 217
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 588 GDLGXXGGGKXXXRGGXGGXXXXGXGXG 505
G G GG+ RGG GG G G G
Sbjct: 138 GGRGGFRGGRGGSRGGFGGNSRGGFGGG 165
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,303,737
Number of Sequences: 5004
Number of extensions: 14952
Number of successful extensions: 115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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