Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_M13
         (956 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0790 - 21214282-21214369,21214455-21214564,21215478-212155...   128   5e-30
08_01_0372 + 3286861-3286939,3287220-3287299,3289041-3289150,328...   128   5e-30
09_04_0106 - 14636773-14636863,14636948-14637057,14638107-146381...   127   1e-29
12_02_0035 - 12563503-12564405,12564494-12565611,12565709-125662...    30   2.4  
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498...    29   7.2  

>08_02_0790 -
           21214282-21214369,21214455-21214564,21215478-21215557,
           21215659-21215737
          Length = 118

 Score =  128 bits (310), Expect = 5e-30
 Identities = 67/108 (62%), Positives = 80/108 (74%), Gaps = 3/108 (2%)
 Frame = +2

Query: 83  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 262
           MVQRLT+R+R SY TKSNQ R+V+TPGGRLVYQY KK    P+C     K++GI   RPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60

Query: 263 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV-KVLK 397
           E  RSRL   ++TV R YGGVL    V++RI+RAFL+EEQKIV KVLK
Sbjct: 61  EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVKKVLK 108


>08_01_0372 +
           3286861-3286939,3287220-3287299,3289041-3289150,
           3289224-3289311
          Length = 118

 Score =  128 bits (310), Expect = 5e-30
 Identities = 67/108 (62%), Positives = 80/108 (74%), Gaps = 3/108 (2%)
 Frame = +2

Query: 83  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 262
           MVQRLT+R+R SY TKSNQ R+V+TPGGRLVYQY KK    P+C     K++GI   RPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60

Query: 263 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV-KVLK 397
           E  RSRL   ++TV R YGGVL    V++RI+RAFL+EEQKIV KVLK
Sbjct: 61  EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVKKVLK 108


>09_04_0106 -
           14636773-14636863,14636948-14637057,14638107-14638186,
           14638302-14638380
          Length = 119

 Score =  127 bits (307), Expect = 1e-29
 Identities = 66/108 (61%), Positives = 80/108 (74%), Gaps = 3/108 (2%)
 Frame = +2

Query: 83  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 262
           MVQRLT+R+R SY TKSNQ R+V+TPGG+LVYQY KK    P+C     K++GI   RPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60

Query: 263 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV-KVLK 397
           E  RSRL   ++TV R YGGVL    V++RI+RAFL+EEQKIV KVLK
Sbjct: 61  EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVKKVLK 108


>12_02_0035 - 12563503-12564405,12564494-12565611,12565709-12566239,
            12566337-12567153
          Length = 1122

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
 Frame = +1

Query: 10   LTDLTIGNSLRFLLSLSPAVKKLENGAAAYIQATTVVQHKIKS-------KKNSKDTGWP 168
            L+   + N      +L   ++ + N  A Y Q     Q  +K+       KK  +DT   
Sbjct: 1031 LSACLLSNGCEHFTTLKADIQGMLNDEAKYAQLRDAAQPVVKAFQVLYWKKKGYEDTLRS 1090

Query: 169  LGLSVCQKAQEDPKVWSMQEQTPWYPAS 252
            L  S+  +++  P  WS Q++    P+S
Sbjct: 1091 LRASLASRSKSQPASWSQQDKDSSTPSS 1118


>03_05_0642 - 26346260-26346367,26347902-26348162,26348542-26349849,
            26349960-26350178,26350241-26350300,26352159-26352215,
            26352945-26353029,26353486-26353843,26353931-26355170
          Length = 1231

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 116  SYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERS 271
            S N   NQ+R+V+  G +      +KP+++      + KL+G    RP  R+
Sbjct: 1123 SNNQSQNQQRLVQVGGKQGAA--TQKPQRLSNARPAREKLKGDNAKRPGSRT 1172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,569,785
Number of Sequences: 37544
Number of extensions: 232023
Number of successful extensions: 515
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2764678640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)