SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_M13
         (956 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L38941-1|AAC41916.1|  117|Homo sapiens ribosomal protein L34 pro...   136   1e-31
CR542242-1|CAG47038.1|  117|Homo sapiens RPL34 protein.               132   2e-30
CR542232-1|CAG47028.1|  117|Homo sapiens RPL34 protein.               132   2e-30
BC106009-1|AAI06010.1|  117|Homo sapiens ribosomal protein L34 p...   132   2e-30
BC070208-1|AAH70208.1|  117|Homo sapiens ribosomal protein L34 p...   132   2e-30
BC001773-1|AAH01773.1|  117|Homo sapiens ribosomal protein L34 p...   132   2e-30
AB061832-1|BAB79470.1|  117|Homo sapiens ribosomal protein L34 p...   132   2e-30
AB007181-1|BAA25840.1|   45|Homo sapiens ribosomal protein L34 p...    60   1e-08
BC113377-1|AAI13378.1| 1043|Homo sapiens F-box protein, helicase...    31   8.2  
BC113375-1|AAI13376.1| 1043|Homo sapiens F-box protein, helicase...    31   8.2  
BC110884-1|AAI10885.1|  969|Homo sapiens FBXO18 protein protein.       31   8.2  
BC080629-1|AAH80629.1|  978|Homo sapiens FBXO18 protein protein.       31   8.2  
BC032674-1|AAH32674.2|  908|Homo sapiens FBXO18 protein protein.       31   8.2  
BC012762-1|AAH12762.2|  338|Homo sapiens FBXO18 protein protein.       31   8.2  
AL137186-6|CAI41074.1| 1094|Homo sapiens F-box protein, helicase...    31   8.2  
AL137186-5|CAI41073.1| 1043|Homo sapiens F-box protein, helicase...    31   8.2  
AL133069-1|CAB61392.1|  281|Homo sapiens hypothetical protein pr...    31   8.2  
AK095343-1|BAC04535.1| 1043|Homo sapiens protein ( Homo sapiens ...    31   8.2  
AK027496-1|BAB55154.1|  779|Homo sapiens protein ( Homo sapiens ...    31   8.2  
AK027381-1|BAB55073.1|  455|Homo sapiens protein ( Homo sapiens ...    31   8.2  
AF456237-1|AAP97705.1| 1043|Homo sapiens testis protein protein.       31   8.2  
AF454502-1|AAP97700.1| 1042|Homo sapiens hypothetical protein pr...    31   8.2  
AF380349-1|AAM73631.1|  969|Homo sapiens F-box DNA helicase 1 pr...    31   8.2  

>L38941-1|AAC41916.1|  117|Homo sapiens ribosomal protein L34
           protein.
          Length = 117

 Score =  136 bits (329), Expect = 1e-31
 Identities = 69/108 (63%), Positives = 78/108 (72%), Gaps = 3/108 (2%)
 Frame = +2

Query: 83  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 256
           MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK  K P+  CG C  KLRG++P R
Sbjct: 1   MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGKLRGVRPVR 60

Query: 257 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQK-IVKVLK 397
           P    RL   KK V R YGG +C KCV+ RI RAFLIEEQK IVKVLK
Sbjct: 61  PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIIVKVLK 108


>CR542242-1|CAG47038.1|  117|Homo sapiens RPL34 protein.
          Length = 117

 Score =  132 bits (318), Expect = 2e-30
 Identities = 67/108 (62%), Positives = 77/108 (71%), Gaps = 3/108 (2%)
 Frame = +2

Query: 83  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 256
           MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK  K P+  CG C  +LRG++  R
Sbjct: 1   MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60

Query: 257 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKI-VKVLK 397
           P    RL   KK V R YGG +C KCV+ RI RAFLIEEQKI VKVLK
Sbjct: 61  PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLK 108


>CR542232-1|CAG47028.1|  117|Homo sapiens RPL34 protein.
          Length = 117

 Score =  132 bits (318), Expect = 2e-30
 Identities = 67/108 (62%), Positives = 77/108 (71%), Gaps = 3/108 (2%)
 Frame = +2

Query: 83  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 256
           MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK  K P+  CG C  +LRG++  R
Sbjct: 1   MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60

Query: 257 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKI-VKVLK 397
           P    RL   KK V R YGG +C KCV+ RI RAFLIEEQKI VKVLK
Sbjct: 61  PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLK 108


>BC106009-1|AAI06010.1|  117|Homo sapiens ribosomal protein L34
           protein.
          Length = 117

 Score =  132 bits (318), Expect = 2e-30
 Identities = 67/108 (62%), Positives = 77/108 (71%), Gaps = 3/108 (2%)
 Frame = +2

Query: 83  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 256
           MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK  K P+  CG C  +LRG++  R
Sbjct: 1   MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60

Query: 257 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKI-VKVLK 397
           P    RL   KK V R YGG +C KCV+ RI RAFLIEEQKI VKVLK
Sbjct: 61  PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLK 108


>BC070208-1|AAH70208.1|  117|Homo sapiens ribosomal protein L34
           protein.
          Length = 117

 Score =  132 bits (318), Expect = 2e-30
 Identities = 67/108 (62%), Positives = 77/108 (71%), Gaps = 3/108 (2%)
 Frame = +2

Query: 83  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 256
           MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK  K P+  CG C  +LRG++  R
Sbjct: 1   MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60

Query: 257 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKI-VKVLK 397
           P    RL   KK V R YGG +C KCV+ RI RAFLIEEQKI VKVLK
Sbjct: 61  PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLK 108


>BC001773-1|AAH01773.1|  117|Homo sapiens ribosomal protein L34
           protein.
          Length = 117

 Score =  132 bits (318), Expect = 2e-30
 Identities = 67/108 (62%), Positives = 77/108 (71%), Gaps = 3/108 (2%)
 Frame = +2

Query: 83  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 256
           MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK  K P+  CG C  +LRG++  R
Sbjct: 1   MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60

Query: 257 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKI-VKVLK 397
           P    RL   KK V R YGG +C KCV+ RI RAFLIEEQKI VKVLK
Sbjct: 61  PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLK 108


>AB061832-1|BAB79470.1|  117|Homo sapiens ribosomal protein L34
           protein.
          Length = 117

 Score =  132 bits (318), Expect = 2e-30
 Identities = 67/108 (62%), Positives = 77/108 (71%), Gaps = 3/108 (2%)
 Frame = +2

Query: 83  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 256
           MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK  K P+  CG C  +LRG++  R
Sbjct: 1   MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60

Query: 257 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKI-VKVLK 397
           P    RL   KK V R YGG +C KCV+ RI RAFLIEEQKI VKVLK
Sbjct: 61  PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLK 108


>AB007181-1|BAA25840.1|   45|Homo sapiens ribosomal protein L34
           protein.
          Length = 45

 Score = 60.1 bits (139), Expect = 1e-08
 Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 2/44 (4%)
 Frame = +2

Query: 92  RLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CG 217
           RLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK  K P+  CG
Sbjct: 1   RLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACG 44


>BC113377-1|AAI13378.1| 1043|Homo sapiens F-box protein, helicase, 18
            protein.
          Length = 1043

 Score = 30.7 bits (66), Expect = 8.2
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +2

Query: 203  IPRC--GQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRI-VRAFLIEE 373
            + RC  GQC + +  +      ++  + Y  +  K   GG LCH C +QRI   AFL   
Sbjct: 960  VVRCCVGQCNNAIP-VDTVLTMKKLPITYSNR--KENKGGYLCHSCAEQRIGPLAFLTAS 1016

Query: 374  QKIVKVLKGT 403
             + V+ ++ T
Sbjct: 1017 PEQVRAMERT 1026


>BC113375-1|AAI13376.1| 1043|Homo sapiens F-box protein, helicase, 18
            protein.
          Length = 1043

 Score = 30.7 bits (66), Expect = 8.2
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +2

Query: 203  IPRC--GQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRI-VRAFLIEE 373
            + RC  GQC + +  +      ++  + Y  +  K   GG LCH C +QRI   AFL   
Sbjct: 960  VVRCCVGQCNNAIP-VDTVLTMKKLPITYSNR--KENKGGYLCHSCAEQRIGPLAFLTAS 1016

Query: 374  QKIVKVLKGT 403
             + V+ ++ T
Sbjct: 1017 PEQVRAMERT 1026


>BC110884-1|AAI10885.1|  969|Homo sapiens FBXO18 protein protein.
          Length = 969

 Score = 30.7 bits (66), Expect = 8.2
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +2

Query: 203  IPRC--GQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRI-VRAFLIEE 373
            + RC  GQC + +  +      ++  + Y  +  K   GG LCH C +QRI   AFL   
Sbjct: 886  VVRCCVGQCNNAIP-VDTVLTMKKLPITYSNR--KENKGGYLCHSCAEQRIGPLAFLTAS 942

Query: 374  QKIVKVLKGT 403
             + V+ ++ T
Sbjct: 943  PEQVRAMERT 952


>BC080629-1|AAH80629.1|  978|Homo sapiens FBXO18 protein protein.
          Length = 978

 Score = 30.7 bits (66), Expect = 8.2
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +2

Query: 203  IPRC--GQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRI-VRAFLIEE 373
            + RC  GQC + +  +      ++  + Y  +  K   GG LCH C +QRI   AFL   
Sbjct: 895  VVRCCVGQCNNAIP-VDTVLTMKKLPITYSNR--KENKGGYLCHSCAEQRIGPLAFLTAS 951

Query: 374  QKIVKVLKGT 403
             + V+ ++ T
Sbjct: 952  PEQVRAMERT 961


>BC032674-1|AAH32674.2|  908|Homo sapiens FBXO18 protein protein.
          Length = 908

 Score = 30.7 bits (66), Expect = 8.2
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +2

Query: 203  IPRC--GQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRI-VRAFLIEE 373
            + RC  GQC + +  +      ++  + Y  +  K   GG LCH C +QRI   AFL   
Sbjct: 825  VVRCCVGQCNNAIP-VDTVLTMKKLPITYSNR--KENKGGYLCHSCAEQRIGPLAFLTAS 881

Query: 374  QKIVKVLKGT 403
             + V+ ++ T
Sbjct: 882  PEQVRAMERT 891


>BC012762-1|AAH12762.2|  338|Homo sapiens FBXO18 protein protein.
          Length = 338

 Score = 30.7 bits (66), Expect = 8.2
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +2

Query: 203 IPRC--GQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRI-VRAFLIEE 373
           + RC  GQC + +  +      ++  + Y  +  K   GG LCH C +QRI   AFL   
Sbjct: 255 VVRCCVGQCNNAIP-VDTVLTMKKLPITYSNR--KENKGGYLCHSCAEQRIGPLAFLTAS 311

Query: 374 QKIVKVLKGT 403
            + V+ ++ T
Sbjct: 312 PEQVRAMERT 321


>AL137186-6|CAI41074.1| 1094|Homo sapiens F-box protein, helicase, 18
            protein.
          Length = 1094

 Score = 30.7 bits (66), Expect = 8.2
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +2

Query: 203  IPRC--GQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRI-VRAFLIEE 373
            + RC  GQC + +  +      ++  + Y  +  K   GG LCH C +QRI   AFL   
Sbjct: 1011 VVRCCVGQCNNAIP-VDTVLTMKKLPITYSNR--KENKGGYLCHSCAEQRIGPLAFLTAS 1067

Query: 374  QKIVKVLKGT 403
             + V+ ++ T
Sbjct: 1068 PEQVRAMERT 1077


>AL137186-5|CAI41073.1| 1043|Homo sapiens F-box protein, helicase, 18
            protein.
          Length = 1043

 Score = 30.7 bits (66), Expect = 8.2
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +2

Query: 203  IPRC--GQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRI-VRAFLIEE 373
            + RC  GQC + +  +      ++  + Y  +  K   GG LCH C +QRI   AFL   
Sbjct: 960  VVRCCVGQCNNAIP-VDTVLTMKKLPITYSNR--KENKGGYLCHSCAEQRIGPLAFLTAS 1016

Query: 374  QKIVKVLKGT 403
             + V+ ++ T
Sbjct: 1017 PEQVRAMERT 1026


>AL133069-1|CAB61392.1|  281|Homo sapiens hypothetical protein
           protein.
          Length = 281

 Score = 30.7 bits (66), Expect = 8.2
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +2

Query: 203 IPRC--GQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRI-VRAFLIEE 373
           + RC  GQC + +  +      ++  + Y  +  K   GG LCH C +QRI   AFL   
Sbjct: 198 VVRCCVGQCNNAIP-VDTVLTMKKLPITYSNR--KENKGGYLCHSCAEQRIGPLAFLTAS 254

Query: 374 QKIVKVLKGT 403
            + V+ ++ T
Sbjct: 255 PEQVRAMERT 264


>AK095343-1|BAC04535.1| 1043|Homo sapiens protein ( Homo sapiens cDNA
            FLJ38024 fis, clone CTONG2012996, highly similar to Mus
            musculus F-box protein FBX18 mRNA. ).
          Length = 1043

 Score = 30.7 bits (66), Expect = 8.2
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +2

Query: 203  IPRC--GQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRI-VRAFLIEE 373
            + RC  GQC + +  +      ++  + Y  +  K   GG LCH C +QRI   AFL   
Sbjct: 960  VVRCCVGQCNNAIP-VDTVLTMKKLPITYSNR--KENKGGYLCHSCAEQRIGPLAFLTAS 1016

Query: 374  QKIVKVLKGT 403
             + V+ ++ T
Sbjct: 1017 PEQVRAMERT 1026


>AK027496-1|BAB55154.1|  779|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14590 fis, clone NT2RM4001880, weakly similar to
           PUTATIVE DNA HELICASE II HOMOLOG (EC 3.6.1.-). ).
          Length = 779

 Score = 30.7 bits (66), Expect = 8.2
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +2

Query: 203 IPRC--GQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRI-VRAFLIEE 373
           + RC  GQC + +  +      ++  + Y  +  K   GG LCH C +QRI   AFL   
Sbjct: 696 VVRCCVGQCNNAIP-VDTVLTMKKLLITYSNR--KENKGGYLCHSCAEQRIGPLAFLTAS 752

Query: 374 QKIVKVLKGT 403
            + V+ ++ T
Sbjct: 753 PEQVRAMERT 762


>AK027381-1|BAB55073.1|  455|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14475 fis, clone MAMMA1001259, highly similar to
           Mus musculus F-box protein FBX18 mRNA. ).
          Length = 455

 Score = 30.7 bits (66), Expect = 8.2
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +2

Query: 203 IPRC--GQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRI-VRAFLIEE 373
           + RC  GQC + +  +      ++  + Y  +  K   GG LCH C +QRI   AFL   
Sbjct: 372 VVRCCVGQCNNAIP-VDTVLTMKKLPITYSNR--KENKGGYLCHSCAEQRIGPLAFLTAS 428

Query: 374 QKIVKVLKGT 403
            + V+ ++ T
Sbjct: 429 PEQVRAMERT 438


>AF456237-1|AAP97705.1| 1043|Homo sapiens testis protein protein.
          Length = 1043

 Score = 30.7 bits (66), Expect = 8.2
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +2

Query: 203  IPRC--GQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRI-VRAFLIEE 373
            + RC  GQC + +  +      ++  + Y  +  K   GG LCH C +QRI   AFL   
Sbjct: 960  VVRCCVGQCNNAIP-VDTVLTMKKLPITYSNR--KENKGGYLCHSCAEQRIGPLAFLTAS 1016

Query: 374  QKIVKVLKGT 403
             + V+ ++ T
Sbjct: 1017 PEQVRAMERT 1026


>AF454502-1|AAP97700.1| 1042|Homo sapiens hypothetical protein
            protein.
          Length = 1042

 Score = 30.7 bits (66), Expect = 8.2
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +2

Query: 203  IPRC--GQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRI-VRAFLIEE 373
            + RC  GQC + +  +      ++  + Y  +  K   GG LCH C +QRI   AFL   
Sbjct: 959  VVRCCVGQCNNAIP-VDTVLTMKKLLITYSNR--KENKGGYLCHSCAEQRIGPLAFLTAS 1015

Query: 374  QKIVKVLKGT 403
             + V+ ++ T
Sbjct: 1016 PEQVRAMERT 1025


>AF380349-1|AAM73631.1|  969|Homo sapiens F-box DNA helicase 1
            protein.
          Length = 969

 Score = 30.7 bits (66), Expect = 8.2
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +2

Query: 203  IPRC--GQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRI-VRAFLIEE 373
            + RC  GQC + +  +      ++  + Y  +  K   GG LCH C +QRI   AFL   
Sbjct: 886  VVRCCVGQCNNAIP-VDTVLTMKKLPITYSNR--KENKGGYLCHSCAEQRIGPLAFLTAS 942

Query: 374  QKIVKVLKGT 403
             + V+ ++ T
Sbjct: 943  PEQVRAMERT 952


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,611,453
Number of Sequences: 237096
Number of extensions: 1325637
Number of successful extensions: 7355
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 7250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7348
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12658656216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -