Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_M12
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.16
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 30 0.38
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.87
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 29 1.2
SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma... 28 1.5
SPBC215.14c |vps20||vacuolar sorting protein Vps20|Schizosacchar... 28 2.0
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 2.7
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 27 3.5
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 4.7
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 27 4.7
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.1
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar... 26 6.1
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|... 26 6.1
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 6.1
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 26 6.1
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac... 26 8.1
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 26 8.1
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 26 8.1
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 26 8.1
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 8.1
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.5 bits (68), Expect = 0.16
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 586 LPPPSNAASTPNTAIXPPLIFPSTPVLAPVVSPPIINRTP*RETSTK 726
LPPP+ A+ + P + + P + P V PP +++ P TS++
Sbjct: 171 LPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSR 217
Score = 31.1 bits (67), Expect = 0.22
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +1
Query: 571 ASKGKLPPPSNAASTPNTAIXPPLIF---PSTPVLAPVVSPPIINRTP 705
+S PP + A TP + + PP PS P +P +PPI ++ P
Sbjct: 118 SSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAP 165
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 30.3 bits (65), Expect = 0.38
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +2
Query: 749 KIQKELQEMKDREQELKKMRKKQK 820
+++ EL+E ++RE+EL K R+K K
Sbjct: 383 RLEDELEEQRERERELAKKRRKNK 406
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.87
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 589 PPPSNAASTPNTAIXPPLIFPSTPVLAPVVSPPII 693
PPP S P+T PP + S V P PP I
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAI 395
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 586 LPPPSNAASTPNTAIX-PPLIFPSTPVLAPVVSPP 687
LPP NA+ T + PP + PS P P +PP
Sbjct: 403 LPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 28.7 bits (61), Expect = 1.2
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = +1
Query: 595 PSNAASTPNTAIXPPLIFPST--PVLAPVVSPPIINRTP*RETSTKGIRPRRREDTKGTT 768
P N P A PP PST AP V P++ + + GI P R++ +T
Sbjct: 539 PRNVVIKPYAAATPPKNIPSTYRAPQAPSVLSPVVTASE-GDFELDGITPERQQTMTRST 597
Query: 769 GNERQRTRAEENEEKT 816
E + E+ +T
Sbjct: 598 YQESSQRPFHEDPFRT 613
>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 111
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/30 (36%), Positives = 25/30 (83%), Gaps = 2/30 (6%)
Frame = +2
Query: 737 PVEEKIQ--KELQEMKDREQELKKMRKKQK 820
P E++++ ++L E+K+RE+ELK+ +++Q+
Sbjct: 34 PYEKRMEQKRKLDEIKEREKELKREKEEQR 63
>SPBC215.14c |vps20||vacuolar sorting protein
Vps20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 226
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 743 EEKIQKELQEMKDREQELKKMRKKQKPFDLELTDDEITPXQKMRN 877
E++IQ+EL + REQE +K++ +KP T ++ P ++N
Sbjct: 148 EDEIQEELDSLI-REQEDEKVKDLEKPGFTPSTGVDVLPSVPLKN 191
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +2
Query: 698 VRPEGKPVRKGYVPVEEKIQKELQEMKDREQELKKMRKKQKPFDLEL 838
+R +PV + EKIQ E Q + + EL ++R +++ ++++
Sbjct: 818 IRDNQRPVIEEIRIYREKIQTETQRLSSLQTELSRLRDEKRNSEVDI 864
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/47 (27%), Positives = 29/47 (61%)
Frame = +2
Query: 695 IVRPEGKPVRKGYVPVEEKIQKELQEMKDREQELKKMRKKQKPFDLE 835
I+ +GKP+ K + EK +++ Q+ K+RE + +KK++ +++
Sbjct: 24 ILGEDGKPLSKKALKKLEKEREKEQKRKEREAREAEEKKKREANEID 70
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = +2
Query: 743 EEKIQKELQEMKDREQE--LKKMRKKQKPFD 829
+ K+ +E++E R+QE LKK+R+K+K D
Sbjct: 569 QAKLLEEIEEENKRKQERELKKIREKEKKRD 599
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 559 QRFIASKGKLPPPSNAASTPNTAIXPPLIFPSTPVLAPVVSPPI 690
Q+F+AS ++P P + + P+ A ++ P P + PPI
Sbjct: 168 QKFMASLAQIPGPLPSGNVPSPAEFQAMMASGFPPFMP-IPPPI 210
>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 761 ELQEMKDREQELKKMRKKQKPFDLELTDDEITPXQ 865
E+ + + L+K+ +K PF+ L DDE TP Q
Sbjct: 38 EIPSLPTNRKILEKIAEKPPPFESPLEDDE-TPDQ 71
>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/39 (28%), Positives = 26/39 (66%)
Frame = +2
Query: 749 KIQKELQEMKDREQELKKMRKKQKPFDLELTDDEITPXQ 865
+++K++QE+KD E + K K+K +L+ ++ ++P +
Sbjct: 91 EMEKQIQELKD-EVSVVKTLYKEKCIELQALNNSLSPAE 128
>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
Snu23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 743 EEKIQKELQEMKDREQELKKMRKKQKPFDLE 835
EE KE E +E E KK+R+KQK + E
Sbjct: 94 EEYSLKERVERYHQELEAKKLRRKQKKVNKE 124
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 586 LPPPSNAASTPNTAIXPPLIFPSTPVLAP 672
LP S S+PN+ + ++ STP+L P
Sbjct: 416 LPQRSRTISSPNSPLSATVLPSSTPILLP 444
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 752 IQKELQEMKDREQELKKMRKKQKPFDLELTDD 847
+Q++++++K +E K PF++EL DD
Sbjct: 263 LQQKVEQLKQSLKEEMSNYKSSVPFEVELNDD 294
>SPBC8D2.19 |mde3||serine/threonine protein kinase
Mde3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 559
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 294 SQRGKENLKKVTSXVNRLMSESTIDVNHQNGHMNGDADE-KISRTLNRAVSTSHLLGPIA 470
S+ K++ ++V + + +SE V +G K + +N ST HL PIA
Sbjct: 353 SREDKKSTRRV-GWLKKNLSEFVSSVKSVFPDSHGSQPHVKTEKPINAKESTGHLANPIA 411
Query: 471 PSN 479
SN
Sbjct: 412 SSN 414
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +1
Query: 709 RETSTKGIRPRRREDTKGTTGNERQRTRAEENEEKTETF*SGTDR**DNSXSEDEE 876
RE K +R+ +K N+ Q+ EEN E ++ + DR + + DEE
Sbjct: 234 RELKKKKAESKRKRTSKPDFKNDVQQNVIEENNESSDNEYATFDRVKKDLFASDEE 289
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +2
Query: 743 EEKIQKELQ---EMKDREQELKKMRKKQKPFDLELTDDEITPXQKMR 874
EE+ +++++ E D E ELKK+ ++ + + L D+E +K++
Sbjct: 51 EEEAERDIEISSESSDEEAELKKLEEEGEEVEKILRDEERIKKRKIQ 97
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 686 LSSIVRPEGKPVRKGYVPVEEKIQKELQEMKD--REQELKKMRKKQKPFDLELTDDE 850
++++ +P+GK RKG +E KI +E +EL+ ++ F + DDE
Sbjct: 7 VNTLPQPQGKHQRKGKKQLENKILHSYEEESAGFDSEELEDNDEQGYSFGVNSEDDE 63
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.8 bits (54), Expect = 8.1
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Frame = +3
Query: 339 NRLMSESTIDVNHQNGHMNGDADEKISRTLNRAVSTSHLLGPIAPSNS--------CSAC 494
NR+M S ++ + +M+ D D S LN VS + PSN C
Sbjct: 1200 NRVMDGSVQALSAVSEYMSLDIDS--SPLLNLLVSFLRKPNRLVPSNVKSNILVLLCKLL 1257
Query: 495 CPHRKWLHASIHSADRY 545
+ KWLHASI + +
Sbjct: 1258 PTNTKWLHASISQTNDF 1274
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,166
Number of Sequences: 5004
Number of extensions: 63647
Number of successful extensions: 289
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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